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    Gpatch8 G patch domain containing 8 [ Mus musculus (house mouse) ]

    Gene ID: 237943, updated on 23-Jun-2021

    Summary

    Official Symbol
    Gpatch8provided by MGI
    Official Full Name
    G patch domain containing 8provided by MGI
    Primary source
    MGI:MGI:1918667
    See related
    Ensembl:ENSMUSG00000034621
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Fbm1; Gpat; Gpatc8; AU018890; mKIAA0553; 5430405G24Rik
    Expression
    Ubiquitous expression in cerebellum adult (RPKM 5.8), CNS E14 (RPKM 5.4) and 28 other tissues See more
    Orthologs
    NEW
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    Try the new Transcript table

    Genomic context

    See Gpatch8 in Genome Data Viewer
    Location:
    11; 11 D- E1
    Exon count:
    14
    Annotation release Status Assembly Chr Location
    109 current GRCm39 (GCF_000001635.27) 11 NC_000077.7 (102366737..102447217, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 11 NC_000077.6 (102475911..102556391, complement)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 11 NC_000077.5 (102337229..102417472, complement)

    Chromosome 11 - NC_000077.7Genomic Context describing neighboring genes Neighboring gene family with sequence similarity 171, member A2 Neighboring gene integrin alpha 2b Neighboring gene cytochrome b-c1 complex subunit 10 pseudogene Neighboring gene midkine pseudogene 1 Neighboring gene predicted gene, 25337 Neighboring gene predicted gene 11627 Neighboring gene frizzled class receptor 2

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Targeted (1) 

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables metal ion binding IEA
    Inferred from Electronic Annotation
    more info
     
    enables nucleic acid binding IEA
    Inferred from Electronic Annotation
    more info
     
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    PubMed 
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
     
    Component Evidence Code Pubs
    is_active_in nucleus IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 

    General protein information

    Preferred Names
    G patch domain-containing protein 8
    Names
    Fyn-binding molecule 1

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001159492.1NP_001152964.1  G patch domain-containing protein 8

      See identical proteins and their annotated locations for NP_001152964.1

      Status: VALIDATED

      Source sequence(s)
      AK142570, BC035255, BE980248, BY136728, CJ057626, CV555545
      Consensus CDS
      CCDS48944.1
      UniProtKB/Swiss-Prot
      A2A6A1
      Related
      ENSMUSP00000120649.2, ENSMUST00000143842.2
      Conserved Domains (3) summary
      pfam01585
      Location:4082
      G-patch; G-patch domain
      pfam12171
      Location:136163
      zf-C2H2_jaz; Zinc-finger double-stranded RNA-binding
      cl02488
      Location:94206
      SPEC; Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; ...

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000077.7 Reference GRCm39 C57BL/6J

      Range
      102366737..102447217 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_017314538.2XP_017170027.1  G patch domain-containing protein 8 isoform X1

      Conserved Domains (2) summary
      PRK03918
      Location:4129
      PRK03918; DNA double-strand break repair ATPase Rad50
      pfam12171
      Location:5885
      zf-C2H2_jaz; Zinc-finger double-stranded RNA-binding
    2. XM_036156674.1XP_036012567.1  G patch domain-containing protein 8 isoform X2

    3. XM_006533251.2XP_006533314.1  G patch domain-containing protein 8 isoform X1

      See identical proteins and their annotated locations for XP_006533314.1

      Conserved Domains (2) summary
      PRK03918
      Location:4129
      PRK03918; DNA double-strand break repair ATPase Rad50
      pfam12171
      Location:5885
      zf-C2H2_jaz; Zinc-finger double-stranded RNA-binding
    4. XM_036156675.1XP_036012568.1  G patch domain-containing protein 8 isoform X2

    5. XM_036156667.1XP_036012560.1  G patch domain-containing protein 8 isoform X1

      Conserved Domains (2) summary
      PRK03918
      Location:4129
      PRK03918; DNA double-strand break repair ATPase Rad50
      pfam12171
      Location:5885
      zf-C2H2_jaz; Zinc-finger double-stranded RNA-binding
    6. XM_030245975.1XP_030101835.1  G patch domain-containing protein 8 isoform X1

      Conserved Domains (2) summary
      PRK03918
      Location:4129
      PRK03918; DNA double-strand break repair ATPase Rad50
      pfam12171
      Location:5885
      zf-C2H2_jaz; Zinc-finger double-stranded RNA-binding
    7. XM_017314541.2XP_017170030.1  G patch domain-containing protein 8 isoform X1

      Conserved Domains (2) summary
      PRK03918
      Location:4129
      PRK03918; DNA double-strand break repair ATPase Rad50
      pfam12171
      Location:5885
      zf-C2H2_jaz; Zinc-finger double-stranded RNA-binding
    8. XM_030245976.1XP_030101836.1  G patch domain-containing protein 8 isoform X2

    9. XM_036156665.1XP_036012558.1  G patch domain-containing protein 8 isoform X1

      Conserved Domains (2) summary
      PRK03918
      Location:4129
      PRK03918; DNA double-strand break repair ATPase Rad50
      pfam12171
      Location:5885
      zf-C2H2_jaz; Zinc-finger double-stranded RNA-binding
    10. XM_036156670.1XP_036012563.1  G patch domain-containing protein 8 isoform X1

      Conserved Domains (2) summary
      PRK03918
      Location:4129
      PRK03918; DNA double-strand break repair ATPase Rad50
      pfam12171
      Location:5885
      zf-C2H2_jaz; Zinc-finger double-stranded RNA-binding
    11. XM_036156666.1XP_036012559.1  G patch domain-containing protein 8 isoform X1

      Conserved Domains (2) summary
      PRK03918
      Location:4129
      PRK03918; DNA double-strand break repair ATPase Rad50
      pfam12171
      Location:5885
      zf-C2H2_jaz; Zinc-finger double-stranded RNA-binding
    12. XM_036156668.1XP_036012561.1  G patch domain-containing protein 8 isoform X1

      Conserved Domains (2) summary
      PRK03918
      Location:4129
      PRK03918; DNA double-strand break repair ATPase Rad50
      pfam12171
      Location:5885
      zf-C2H2_jaz; Zinc-finger double-stranded RNA-binding
    13. XM_036156672.1XP_036012565.1  G patch domain-containing protein 8 isoform X1

      Conserved Domains (2) summary
      PRK03918
      Location:4129
      PRK03918; DNA double-strand break repair ATPase Rad50
      pfam12171
      Location:5885
      zf-C2H2_jaz; Zinc-finger double-stranded RNA-binding
    14. XM_006533248.1XP_006533311.1  G patch domain-containing protein 8 isoform X1

      See identical proteins and their annotated locations for XP_006533311.1

      Conserved Domains (2) summary
      PRK03918
      Location:4129
      PRK03918; DNA double-strand break repair ATPase Rad50
      pfam12171
      Location:5885
      zf-C2H2_jaz; Zinc-finger double-stranded RNA-binding
    15. XM_017314544.2XP_017170033.1  G patch domain-containing protein 8 isoform X2

    16. XM_030245977.1XP_030101837.1  G patch domain-containing protein 8 isoform X2

    17. XM_036156673.1XP_036012566.1  G patch domain-containing protein 8 isoform X1

      Conserved Domains (2) summary
      PRK03918
      Location:4129
      PRK03918; DNA double-strand break repair ATPase Rad50
      pfam12171
      Location:5885
      zf-C2H2_jaz; Zinc-finger double-stranded RNA-binding
    18. XM_036156669.1XP_036012562.1  G patch domain-containing protein 8 isoform X1

      Conserved Domains (2) summary
      PRK03918
      Location:4129
      PRK03918; DNA double-strand break repair ATPase Rad50
      pfam12171
      Location:5885
      zf-C2H2_jaz; Zinc-finger double-stranded RNA-binding
    19. XM_036156671.1XP_036012564.1  G patch domain-containing protein 8 isoform X1

      Conserved Domains (2) summary
      PRK03918
      Location:4129
      PRK03918; DNA double-strand break repair ATPase Rad50
      pfam12171
      Location:5885
      zf-C2H2_jaz; Zinc-finger double-stranded RNA-binding
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