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    Ofd1 OFD1, centriole and centriolar satellite protein [ Mus musculus (house mouse) ]

    Gene ID: 237222, updated on 23-Jun-2021

    Summary

    Official Symbol
    Ofd1provided by MGI
    Official Full Name
    OFD1, centriole and centriolar satellite proteinprovided by MGI
    Primary source
    MGI:MGI:1350328
    See related
    Ensembl:ENSMUSG00000040586
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    ORF2; Cxorf5; DXGgc7e
    Expression
    Ubiquitous expression in CNS E11.5 (RPKM 2.6), CNS E14 (RPKM 2.5) and 25 other tissues See more
    Orthologs
    NEW
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    Genomic context

    See Ofd1 in Genome Data Viewer
    Location:
    X F5; X 77.28 cM
    Exon count:
    23
    Annotation release Status Assembly Chr Location
    109 current GRCm39 (GCF_000001635.27) X NC_000086.8 (165171503..165223700, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) X NC_000086.7 (166386573..166440704, complement)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) X NC_000086.6 (162827965..162878636, complement)

    Chromosome X - NC_000086.8Genomic Context describing neighboring genes Neighboring gene glucosaminyl (N-acetyl) transferase 1, core 2 pseudogene Neighboring gene gem nuclear organelle associated protein 8 Neighboring gene glycoprotein m6b Neighboring gene trafficking protein particle complex 2 Neighboring gene RAB9, member RAS oncogene family

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)

    Pathways from PubChem

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables alpha-tubulin binding IDA
    Inferred from Direct Assay
    more info
    PubMed 
    enables gamma-tubulin binding IDA
    Inferred from Direct Assay
    more info
    PubMed 
    enables identical protein binding ISO
    Inferred from Sequence Orthology
    more info
     
    Component Evidence Code Pubs
    located_in cell projection IEA
    Inferred from Electronic Annotation
    more info
     
    located_in centriolar satellite IDA
    Inferred from Direct Assay
    more info
    PubMed 
    located_in centriole IDA
    Inferred from Direct Assay
    more info
    PubMed 
    located_in centriole ISO
    Inferred from Sequence Orthology
    more info
     
    is_active_in centrosome IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    located_in centrosome ISO
    Inferred from Sequence Orthology
    more info
     
    is_active_in ciliary basal body IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    located_in ciliary basal body IDA
    Inferred from Direct Assay
    more info
    PubMed 
    located_in ciliary basal body ISO
    Inferred from Sequence Orthology
    more info
     
    located_in cilium IDA
    Inferred from Direct Assay
    more info
    PubMed 
    located_in cilium ISO
    Inferred from Sequence Orthology
    more info
     
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
     
    located_in cytoskeleton IEA
    Inferred from Electronic Annotation
    more info
     
    located_in microtubule cytoskeleton ISO
    Inferred from Sequence Orthology
    more info
     
    is_active_in motile cilium IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
     

    General protein information

    Preferred Names
    oral-facial-digital syndrome 1 protein homolog
    Names
    oral-facial-digital syndrome 1 gene homolog

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_177429.3NP_803178.2  oral-facial-digital syndrome 1 protein homolog

      See identical proteins and their annotated locations for NP_803178.2

      Status: VALIDATED

      Source sequence(s)
      AJ438159, AK141310, BB652746
      Consensus CDS
      CCDS53248.1
      UniProtKB/Swiss-Prot
      Q80Z25
      UniProtKB/TrEMBL
      A2AEG2, Q3URP3
      Related
      ENSMUSP00000041744.9, ENSMUST00000049501.9
      Conserved Domains (1) summary
      pfam16045
      Location:76102
      LisH_2; LisH

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000086.8 Reference GRCm39 C57BL/6J

      Range
      165171503..165223700 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006528839.5XP_006528902.1  oral-facial-digital syndrome 1 protein homolog isoform X1

      Conserved Domains (3) summary
      COG1196
      Location:277558
      Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
      pfam10459
      Location:182359
      Peptidase_S46; Peptidase S46
      pfam16045
      Location:76102
      LisH_2
    2. XM_036161947.1XP_036017840.1  oral-facial-digital syndrome 1 protein homolog isoform X3

      Conserved Domains (1) summary
      COG1196
      Location:2283
      Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
    3. XM_036161946.1XP_036017839.1  oral-facial-digital syndrome 1 protein homolog isoform X2

      Conserved Domains (1) summary
      COG1196
      Location:2283
      Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]

    RNA

    1. XR_004940336.1 RNA Sequence

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