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    Ercc6l excision repair cross-complementing rodent repair deficiency complementation group 6 like [ Mus musculus (house mouse) ]

    Gene ID: 236930, updated on 22-Aug-2021

    Summary

    Official Symbol
    Ercc6lprovided by MGI
    Official Full Name
    excision repair cross-complementing rodent repair deficiency complementation group 6 likeprovided by MGI
    Primary source
    MGI:MGI:2654144
    See related
    Ensembl:ENSMUSG00000051220
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    BC004701; D330021P09Rik
    Expression
    Biased expression in liver E14 (RPKM 4.8), CNS E11.5 (RPKM 4.2) and 10 other tissues See more
    Orthologs
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    Genomic context

    See Ercc6l in Genome Data Viewer
    Location:
    X; X D
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    109 current GRCm39 (GCF_000001635.27) X NC_000086.8 (101186426..101200697, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) X NC_000086.7 (102142820..102157091, complement)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) X NC_000086.6 (99338159..99352430, complement)

    Chromosome X - NC_000086.8Genomic Context describing neighboring genes Neighboring gene peptidyl-prolyl cis/trans isomerase, NIMA-interacting, 4 (parvulin) Neighboring gene high mobility group protein B1 pseudogene Neighboring gene protein phosphatase 1 regulatory subunit 14B pseudogene Neighboring gene ribosomal protein S4, X-linked

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)

    Pathways from PubChem

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Homology

    Clone Names

    • MGC7766

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
     
    enables ATP-dependent chromatin remodeler activity IEA
    Inferred from Electronic Annotation
    more info
     
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
     
    enables DNA helicase activity IEA
    Inferred from Electronic Annotation
    more info
     
    enables DNA translocase activity IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    enables DNA translocase activity ISO
    Inferred from Sequence Orthology
    more info
     
    enables helicase activity IEA
    Inferred from Electronic Annotation
    more info
     
    enables hydrolase activity IEA
    Inferred from Electronic Annotation
    more info
     
    enables nucleotide binding IEA
    Inferred from Electronic Annotation
    more info
     
    Process Evidence Code Pubs
    acts_upstream_of_or_within cell cycle IEA
    Inferred from Electronic Annotation
    more info
     
    acts_upstream_of_or_within cell division IEA
    Inferred from Electronic Annotation
    more info
     
    Component Evidence Code Pubs
    located_in chromosome IEA
    Inferred from Electronic Annotation
    more info
     
    located_in chromosome, centromeric region IEA
    Inferred from Electronic Annotation
    more info
     
    located_in kinetochore IEA
    Inferred from Electronic Annotation
    more info
     

    General protein information

    Preferred Names
    DNA excision repair protein ERCC-6-like
    Names
    ATP-dependent helicase ERCC6-like
    SNF2/RAD54 family protein
    excision repair cross-complementing rodent repair deficiency complementation group 6 - like
    NP_666347.2

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_146235.3NP_666347.2  DNA excision repair protein ERCC-6-like

      See identical proteins and their annotated locations for NP_666347.2

      Status: VALIDATED

      Source sequence(s)
      AK029015, AL807784
      Consensus CDS
      CCDS30321.1
      UniProtKB/Swiss-Prot
      Q8BHK9
      Related
      ENSMUSP00000050592.3, ENSMUST00000056904.3
      Conserved Domains (3) summary
      cd00046
      Location:117260
      DEXDc; DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
      pfam00176
      Location:100418
      SNF2_N; SNF2 family N-terminal domain
      pfam00271
      Location:462577
      Helicase_C; Helicase conserved C-terminal domain

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000086.8 Reference GRCm39 C57BL/6J

      Range
      101186426..101200697 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
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