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    Ercc6l excision repair cross-complementing rodent repair deficiency complementation group 6 like [ Mus musculus (house mouse) ]

    Gene ID: 236930, updated on 5-Aug-2018

    Summary

    Official Symbol
    Ercc6lprovided by MGI
    Official Full Name
    excision repair cross-complementing rodent repair deficiency complementation group 6 likeprovided by MGI
    Primary source
    MGI:MGI:2654144
    See related
    Ensembl:ENSMUSG00000051220 Vega:OTTMUSG00000018309
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    BC004701; D330021P09Rik
    Expression
    Biased expression in liver E14 (RPKM 4.8), CNS E11.5 (RPKM 4.2) and 10 other tissues See more
    Orthologs

    Genomic context

    See Ercc6l in Genome Data Viewer
    Location:
    X; X D
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    106 current GRCm38.p4 (GCF_000001635.24) X NC_000086.7 (102142820..102157091, complement)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) X NC_000086.6 (99338159..99352430, complement)

    Chromosome X - NC_000086.7Genomic Context describing neighboring genes Neighboring gene protein (peptidyl-prolyl cis/trans isomerase) NIMA-interacting, 4 (parvulin) Neighboring gene high mobility group protein B1 pseudogene Neighboring gene protein phosphatase 1 regulatory subunit 14B pseudogene Neighboring gene ribosomal protein S4, X-linked

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Pathways from BioSystems

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Homology

    Clone Names

    • MGC7766

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    ATP binding IEA
    Inferred from Electronic Annotation
    more info
     
    DNA binding IEA
    Inferred from Electronic Annotation
    more info
     
    DNA translocase activity ISO
    Inferred from Sequence Orthology
    more info
     
    helicase activity IEA
    Inferred from Electronic Annotation
    more info
     
    hydrolase activity IEA
    Inferred from Electronic Annotation
    more info
     
    nucleotide binding IEA
    Inferred from Electronic Annotation
    more info
     
    Process Evidence Code Pubs
    cell cycle IEA
    Inferred from Electronic Annotation
    more info
     
    cell division IEA
    Inferred from Electronic Annotation
    more info
     
    Component Evidence Code Pubs
    chromosome IEA
    Inferred from Electronic Annotation
    more info
     
    chromosome, centromeric region IEA
    Inferred from Electronic Annotation
    more info
     
    kinetochore IEA
    Inferred from Electronic Annotation
    more info
     

    General protein information

    Preferred Names
    DNA excision repair protein ERCC-6-like
    Names
    ATP-dependent helicase ERCC6-like
    SNF2/RAD54 family protein
    excision repair cross-complementing rodent repair deficiency complementation group 6 - like
    NP_666347.2

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_146235.3NP_666347.2  DNA excision repair protein ERCC-6-like

      See identical proteins and their annotated locations for NP_666347.2

      Status: VALIDATED

      Source sequence(s)
      AK029015, AL807784
      Consensus CDS
      CCDS30321.1
      UniProtKB/Swiss-Prot
      Q8BHK9
      Related
      ENSMUSP00000050592.2, OTTMUSP00000019886, ENSMUST00000056904.2, OTTMUST00000044238
      Conserved Domains (3) summary
      cd00046
      Location:117260
      DEXDc; DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
      pfam00176
      Location:100418
      SNF2_N; SNF2 family N-terminal domain
      pfam00271
      Location:462577
      Helicase_C; Helicase conserved C-terminal domain

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm38.p4 C57BL/6J

    Genomic

    1. NC_000086.7 Reference GRCm38.p4 C57BL/6J

      Range
      102142820..102157091 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
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