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    Dnajc13 DnaJ heat shock protein family (Hsp40) member C13 [ Mus musculus (house mouse) ]

    Gene ID: 235567, updated on 5-Aug-2018

    Summary

    Official Symbol
    Dnajc13provided by MGI
    Official Full Name
    DnaJ heat shock protein family (Hsp40) member C13provided by MGI
    Primary source
    MGI:MGI:2676368
    See related
    Ensembl:ENSMUSG00000032560 Vega:OTTMUSG00000049291
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Rme8; RME-8; Gm1124; mKIAA0678; D030002L11Rik
    Expression
    Ubiquitous expression in placenta adult (RPKM 11.9), kidney adult (RPKM 9.7) and 28 other tissues See more
    Orthologs

    Genomic context

    See Dnajc13 in Genome Data Viewer
    Location:
    9; 9 F1
    Exon count:
    59
    Annotation release Status Assembly Chr Location
    106 current GRCm38.p4 (GCF_000001635.24) 9 NC_000075.6 (104151597..104263172, complement)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 9 NC_000075.5 (104053927..104165260, complement)

    Chromosome 9 - NC_000075.6Genomic Context describing neighboring genes Neighboring gene ubiquitin-like modifier activating enzyme 5 Neighboring gene acyl-Coenzyme A dehydrogenase family, member 11 Neighboring gene atypical chemokine receptor 4 Neighboring gene high mobility group box 1, related sequence 16 Neighboring gene predicted gene, 46130 Neighboring gene acid phosphatase, prostate Neighboring gene predicted gene 28548

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Endonuclease-mediated (1) 

    Pathways from BioSystems

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Homology

    Clone Names

    • KIAA0678

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    molecular_function ND
    No biological Data available
    more info
     
    Process Evidence Code Pubs
    endosome organization ISO
    Inferred from Sequence Orthology
    more info
     
    receptor-mediated endocytosis IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    regulation of early endosome to late endosome transport ISO
    Inferred from Sequence Orthology
    more info
     
    regulation of early endosome to recycling endosome transport ISO
    Inferred from Sequence Orthology
    more info
     
    Component Evidence Code Pubs
    colocalizes_with WASH complex ISO
    Inferred from Sequence Orthology
    more info
     
    cytosol ISO
    Inferred from Sequence Orthology
    more info
     
    early endosome membrane ISO
    Inferred from Sequence Orthology
    more info
     
    endosome membrane IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    endosome membrane ISO
    Inferred from Sequence Orthology
    more info
     
    intracellular membrane-bounded organelle ISO
    Inferred from Sequence Orthology
    more info
     

    General protein information

    Preferred Names
    dnaJ homolog subfamily C member 13
    Names
    DnaJ (Hsp40) homolog, subfamily C, member 13
    j-domain containing protein, required for endocytosis
    receptor mediated endocytosis RME-8

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001163026.1NP_001156498.1  dnaJ homolog subfamily C member 13 isoform 2

      See identical proteins and their annotated locations for NP_001156498.1

      Status: VALIDATED

      Source sequence(s)
      AB093258, AK083408, AK165345, CD355544, CN457549, CN534380, CO045605, CV884028
      Consensus CDS
      CCDS52904.1
      UniProtKB/TrEMBL
      G3X922, Q3TNE7, Q8BNL1, Q8CHD7
      Related
      ENSMUSP00000035170.6, OTTMUSP00000068060, ENSMUST00000035170.12, OTTMUST00000125683
      Conserved Domains (2) summary
      pfam00226
      Location:13011354
      DnaJ; DnaJ domain
      pfam14237
      Location:9761020
      DUF4339; Domain of unknown function (DUF4339)
    2. NM_001359740.1NP_001346669.1  dnaJ homolog subfamily C member 13 isoform 1

      Status: VALIDATED

      Source sequence(s)
      AC145736, CT030733
      Conserved Domains (2) summary
      pfam00226
      Location:13061359
      DnaJ; DnaJ domain
      pfam14237
      Location:9811025
      DUF4339; Domain of unknown function (DUF4339)

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm38.p4 C57BL/6J

    Genomic

    1. NC_000075.6 Reference GRCm38.p4 C57BL/6J

      Range
      104151597..104263172 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006511708.3XP_006511771.1  dnaJ homolog subfamily C member 13 isoform X1

      UniProtKB/TrEMBL
      D4AFX7
      Related
      ENSMUSP00000139804.1, OTTMUSP00000068159, ENSMUST00000186788.6, OTTMUST00000125941
      Conserved Domains (2) summary
      pfam00226
      Location:13061359
      DnaJ; DnaJ domain
      pfam14237
      Location:9811025
      DUF4339; Domain of unknown function (DUF4339)
    2. XM_011242878.2XP_011241180.1  dnaJ homolog subfamily C member 13 isoform X2

      Conserved Domains (1) summary
      pfam00226
      Location:192245
      DnaJ; DnaJ domain

    RNA

    1. XR_871081.2 RNA Sequence

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