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    Dmxl2 Dmx-like 2 [ Mus musculus (house mouse) ]

    Gene ID: 235380, updated on 5-Sep-2021

    Summary

    Official Symbol
    Dmxl2provided by MGI
    Official Full Name
    Dmx-like 2provided by MGI
    Primary source
    MGI:MGI:2444630
    See related
    Ensembl:ENSMUSG00000041268
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    mKIAA0856; 6330586A12; 6430411K14Rik; E130119P06Rik
    Expression
    Broad expression in cerebellum adult (RPKM 12.1), CNS E18 (RPKM 11.9) and 18 other tissues See more
    Orthologs
    NEW
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    Try the new Transcript table

    Genomic context

    See Dmxl2 in Genome Data Viewer
    Location:
    9; 9 A5.3
    Exon count:
    44
    Annotation release Status Assembly Chr Location
    109 current GRCm39 (GCF_000001635.27) 9 NC_000075.7 (54272442..54409150, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 9 NC_000075.6 (54365158..54501866, complement)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 9 NC_000075.5 (54212965..54349433, complement)

    Chromosome 9 - NC_000075.7Genomic Context describing neighboring genes Neighboring gene putative 60S ribosomal protein L37a Neighboring gene gliomedin, opposite strand Neighboring gene gliomedin Neighboring gene SH2 domain containing 7 Neighboring gene calcium and integrin binding family member 2 Neighboring gene isocitrate dehydrogenase 3 (NAD+) alpha

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables small GTPase binding ISO
    Inferred from Sequence Orthology
    more info
     
    Component Evidence Code Pubs
    part_of RAVE complex IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    located_in cell junction IEA
    Inferred from Electronic Annotation
    more info
     
    located_in cytoplasmic vesicle IEA
    Inferred from Electronic Annotation
    more info
     
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
     
    is_active_in neuronal dense core vesicle IDA
    Inferred from Direct Assay
    more info
    PubMed 
    located_in neuronal dense core vesicle IDA
    Inferred from Direct Assay
    more info
    PubMed 
    located_in synapse IEA
    Inferred from Electronic Annotation
    more info
     
    located_in synaptic vesicle ISO
    Inferred from Sequence Orthology
    more info
     

    General protein information

    Preferred Names
    dmX-like protein 2
    Names
    rabconnectin-3

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_172771.2NP_766359.2  dmX-like protein 2

      Status: VALIDATED

      Source sequence(s)
      AC161589, CT010507
      Consensus CDS
      CCDS52799.1
      UniProtKB/TrEMBL
      B0V2P5
      Related
      ENSMUSP00000113705.2, ENSMUST00000118163.8
      Conserved Domains (4) summary
      COG2319
      Location:27893046
      WD40; WD40 repeat [General function prediction only]
      pfam12234
      Location:11721901
      Rav1p_C; RAVE protein 1 C terminal
      sd00039
      Location:28282868
      7WD40; WD40 repeat [structural motif]
      cl02567
      Location:27843036
      WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000075.7 Reference GRCm39 C57BL/6J

      Range
      54272442..54409150 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006511085.4XP_006511148.2  dmX-like protein 2 isoform X3

      See identical proteins and their annotated locations for XP_006511148.2

      UniProtKB/Swiss-Prot
      Q8BPN8
      Related
      ENSMUSP00000113693.2, ENSMUST00000118600.8
      Conserved Domains (3) summary
      sd00039
      Location:28062846
      7WD40; WD40 repeat [structural motif]
      pfam12234
      Location:11721901
      Rav1p_C; RAVE protein 1 C terminal
      cl29593
      Location:27623014
      WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
    2. XM_006511083.4XP_006511146.2  dmX-like protein 2 isoform X1

      Conserved Domains (3) summary
      sd00039
      Location:28272867
      7WD40; WD40 repeat [structural motif]
      pfam12234
      Location:11721901
      Rav1p_C; RAVE protein 1 C terminal
      cl29593
      Location:27833035
      WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
    3. XM_006511084.4XP_006511147.2  dmX-like protein 2 isoform X2

      See identical proteins and their annotated locations for XP_006511147.2

      Conserved Domains (3) summary
      sd00039
      Location:28072847
      7WD40; WD40 repeat [structural motif]
      pfam12234
      Location:11721901
      Rav1p_C; RAVE protein 1 C terminal
      cl29593
      Location:27633015
      WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
    4. XM_036154894.1XP_036010787.1  dmX-like protein 2 isoform X4

      Related
      ENSMUSP00000119959.2, ENSMUST00000123709.8
      Conserved Domains (3) summary
      sd00039
      Location:23452385
      7WD40; WD40 repeat [structural motif]
      pfam12234
      Location:6891418
      Rav1p_C; RAVE protein 1 C terminal
      cl29593
      Location:23012553
      WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
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