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    Ppan peter pan homolog [ Mus musculus (house mouse) ]

    Gene ID: 235036, updated on 23-Jun-2021

    Summary

    Official Symbol
    Ppanprovided by MGI
    Official Full Name
    peter pan homologprovided by MGI
    Primary source
    MGI:MGI:2178445
    See related
    Ensembl:ENSMUSG00000004100
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    SS; SSF1; A230087P06Rik
    Expression
    Ubiquitous expression in liver E14.5 (RPKM 44.9), ovary adult (RPKM 43.6) and 28 other tissues See more
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    Genomic context

    See Ppan in Genome Data Viewer
    Location:
    9; 9 A3
    Exon count:
    11
    Annotation release Status Assembly Chr Location
    109 current GRCm39 (GCF_000001635.27) 9 NC_000075.7 (20799471..20803475)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 9 NC_000075.6 (20888175..20892179)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 9 NC_000075.5 (20692619..20696623)

    Chromosome 9 - NC_000075.7Genomic Context describing neighboring genes Neighboring gene predicted gene, 39300 Neighboring gene shiftless antiviral inhibitor of ribosomal frameshifting Neighboring gene angiopoietin-like 6 Neighboring gene predicted gene, 24067 Neighboring gene predicted gene, 23008 Neighboring gene eukaryotic translation initiation factor 3, subunit G Neighboring gene DNA methyltransferase (cytosine-5) 1 Neighboring gene microRNA 7081

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Homology

    • Homologs of the Ppan gene: The Ppan gene is conserved in human, chimpanzee, dog, cow, rat, zebrafish, fruit fly, mosquito, S.cerevisiae, K.lactis, E.gossypii, S.pombe, M.oryzae, N.crassa, A.thaliana, rice, and frog.
    • Orthologs

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables rRNA binding IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    Process Evidence Code Pubs
    involved_in rRNA processing IEA
    Inferred from Electronic Annotation
    more info
     
    acts_upstream_of_or_within regulation of cell growth by extracellular stimulus ISO
    Inferred from Sequence Orthology
    more info
    PubMed 
    involved_in ribosomal large subunit assembly IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    Component Evidence Code Pubs
    located_in nucleus ISO
    Inferred from Sequence Orthology
    more info
     
    part_of preribosome, large subunit precursor IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 

    General protein information

    Preferred Names
    suppressor of SWI4 1 homolog
    Names
    second-step splicing factor 1
    ssf-1
    suppressor of sterile four 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_145610.2NP_663585.2  suppressor of SWI4 1 homolog

      See identical proteins and their annotated locations for NP_663585.2

      Status: VALIDATED

      Source sequence(s)
      AK039027, BB749945, CJ077201
      Consensus CDS
      CCDS22887.1
      UniProtKB/Swiss-Prot
      Q91YU8
      Related
      ENSMUSP00000004203.6, ENSMUST00000004203.6
      Conserved Domains (2) summary
      pfam04427
      Location:35285
      Brix; Brix domain
      cl00935
      Location:270341
      Brix; Brix domain

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000075.7 Reference GRCm39 C57BL/6J

      Range
      20799471..20803475
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
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