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    Med17 mediator complex subunit 17 [ Mus musculus (house mouse) ]

    Gene ID: 234959, updated on 26-Sep-2022

    Summary

    Official Symbol
    Med17provided by MGI
    Official Full Name
    mediator complex subunit 17provided by MGI
    Primary source
    MGI:MGI:2182585
    See related
    Ensembl:ENSMUSG00000031935 AllianceGenome:MGI:2182585
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    77kDa; Crsp6; Trap80; C330002H14Rik
    Summary
    Predicted to enable nuclear receptor coactivator activity and thyroid hormone receptor binding activity. Acts upstream of or within stem cell population maintenance. Part of mediator complex. Is expressed in female associated reproductive structure; limb mesenchyme; male associated reproductive structure; ovary; and testis. Human ortholog(s) of this gene implicated in infantile cerebral and cerebellar atrophy with postnatal progressive microcephaly. Orthologous to human MED17 (mediator complex subunit 17). [provided by Alliance of Genome Resources, Apr 2022]
    Expression
    Ubiquitous expression in placenta adult (RPKM 6.0), ovary adult (RPKM 5.5) and 28 other tissues See more
    Orthologs
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    Genomic context

    See Med17 in Genome Data Viewer
    Location:
    9; 9 A2
    Exon count:
    12
    Annotation release Status Assembly Chr Location
    109 current GRCm39 (GCF_000001635.27) 9 NC_000075.7 (15171647..15194576, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 9 NC_000075.6 (15260351..15279906, complement)

    Chromosome 9 - NC_000075.7Genomic Context describing neighboring genes Neighboring gene predicted gene, 39293 Neighboring gene predicted gene, 51702 Neighboring gene V-set and transmembrane domain containing 5 Neighboring gene RIKEN cDNA 4931406C07 gene Neighboring gene TATA-box binding protein associated factor, RNA polymerase I, D Neighboring gene microRNA 7650

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Targeted (2) 

    Pathways from PubChem

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables nuclear receptor coactivator activity ISO
    Inferred from Sequence Orthology
    more info
     
    enables nuclear thyroid hormone receptor binding ISO
    Inferred from Sequence Orthology
    more info
     
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    PubMed 
    enables transcription coactivator activity ISO
    Inferred from Sequence Orthology
    more info
     
    enables transcription coregulator activity IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    enables transcription coregulator activity ISO
    Inferred from Sequence Orthology
    more info
     
    contributes_to ubiquitin protein ligase activity ISO
    Inferred from Sequence Orthology
    more info
     
    Component Evidence Code Pubs
    part_of core mediator complex IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    part_of core mediator complex ISO
    Inferred from Sequence Orthology
    more info
     
    part_of mediator complex IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    part_of mediator complex IDA
    Inferred from Direct Assay
    more info
    PubMed 
    part_of mediator complex ISO
    Inferred from Sequence Orthology
    more info
    PubMed 
    located_in nucleoplasm TAS
    Traceable Author Statement
    more info
     
    located_in nucleus ISO
    Inferred from Sequence Orthology
    more info
     
    part_of transcription regulator complex ISO
    Inferred from Sequence Orthology
    more info
     
    part_of ubiquitin ligase complex ISO
    Inferred from Sequence Orthology
    more info
     

    General protein information

    Preferred Names
    mediator of RNA polymerase II transcription subunit 17
    Names
    CRSP complex subunit 6
    cofactor required for Sp1 transcriptional activation, subunit 6 (77kD)
    thyroid hormone receptor-associated protein complex 80 kDa component

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001364533.1NP_001351462.1  mediator of RNA polymerase II transcription subunit 17 isoform 2

      Status: VALIDATED

      Source sequence(s)
      AC154296
      Conserved Domains (1) summary
      pfam10156
      Location:123396
      Med17; Subunit 17 of Mediator complex
    2. NM_144933.2NP_659182.1  mediator of RNA polymerase II transcription subunit 17 isoform 1

      See identical proteins and their annotated locations for NP_659182.1

      Status: VALIDATED

      Source sequence(s)
      BC020185, CJ078373
      Consensus CDS
      CCDS22834.1
      UniProtKB/Swiss-Prot
      Q8VCD5, Q99KQ1
      Related
      ENSMUSP00000034411.9, ENSMUST00000034411.10
      Conserved Domains (1) summary
      pfam10156
      Location:123396
      Med17; Subunit 17 of Mediator complex

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000075.7 Reference GRCm39 C57BL/6J

      Range
      15171647..15194576 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_036154859.1XP_036010752.1  mediator of RNA polymerase II transcription subunit 17 isoform X1

      Conserved Domains (1) summary
      pfam10156
      Location:50316
      Med17; Subunit 17 of Mediator complex