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    Cfap300 cilia and flagella associated protein 300 [ Mus musculus (house mouse) ]

    Gene ID: 234912, updated on 23-Jun-2021

    Summary

    Official Symbol
    Cfap300provided by MGI
    Official Full Name
    cilia and flagella associated protein 300provided by MGI
    Primary source
    MGI:MGI:3045346
    See related
    Ensembl:ENSMUSG00000053070
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    9230110C19Rik
    Expression
    Broad expression in testis adult (RPKM 16.9), whole brain E14.5 (RPKM 4.3) and 16 other tissues See more
    Orthologs
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    Genomic context

    See Cfap300 in Genome Data Viewer
    Location:
    9; 9 A1
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    109 current GRCm39 (GCF_000001635.27) 9 NC_000075.7 (8021673..8042876, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 9 NC_000075.6 (8021672..8042875, complement)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 9 NC_000075.5 (8021672..8042823, complement)

    Chromosome 9 - NC_000075.7Genomic Context describing neighboring genes Neighboring gene baculoviral IAP repeat-containing 3 Neighboring gene yes-associated protein 1 Neighboring gene centrosomal protein 126 Neighboring gene angiopoietin-related protein 5 pseudogene Neighboring gene predicted gene 7495

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Endonuclease-mediated (1) 

    General gene information

    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
     
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
     
    Component Evidence Code Pubs
    located_in cell projection IEA
    Inferred from Electronic Annotation
    more info
     
    is_active_in cellular_component ND
    No biological Data available
    more info
     
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
     
    located_in cytoskeleton IEA
    Inferred from Electronic Annotation
    more info
     

    General protein information

    Preferred Names
    cilia- and flagella-associated protein 300
    Names
    uncharacterized protein C11orf70 homolog

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001358295.1NP_001345224.1  cilia- and flagella-associated protein 300 isoform 2

      Status: VALIDATED

      Source sequence(s)
      AC139885
      Conserved Domains (1) summary
      pfam14926
      Location:14218
      DUF4498; Domain of unknown function (DUF4498)
    2. NM_199017.3NP_950182.1  cilia- and flagella-associated protein 300 isoform 1

      See identical proteins and their annotated locations for NP_950182.1

      Status: VALIDATED

      Source sequence(s)
      AK033793, BB855089, BY786171
      Consensus CDS
      CCDS22813.1
      UniProtKB/TrEMBL
      Q8CC70
      Related
      ENSMUSP00000063450.2, ENSMUST00000065291.2
      Conserved Domains (1) summary
      pfam14926
      Location:14259
      DUF4498; Domain of unknown function (DUF4498)

    RNA

    1. NR_152396.1 RNA Sequence

      Status: VALIDATED

      Description
      Transcript Variant: This variant (3) is represented as non-coding because it lacks a large portion of the CDS found in variant 1.
      Source sequence(s)
      AK033793, BB855089, BC115525, BY786171
    2. NR_152397.1 RNA Sequence

      Status: VALIDATED

      Description
      Transcript Variant: This variant (4) is represented as non-coding because it lacks a large portion of the CDS found in variant 1.
      Source sequence(s)
      AK033793, BB855089, BC127165, BY786171

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000075.7 Reference GRCm39 C57BL/6J

      Range
      8021673..8042876 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006509861.2XP_006509924.1  cilia- and flagella-associated protein 300 isoform X1

      Conserved Domains (1) summary
      pfam14926
      Location:1221
      DUF4498; Domain of unknown function (DUF4498)
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