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    Atmin ATM interactor [ Mus musculus (house mouse) ]

    Gene ID: 234776, updated on 31-Jan-2019

    Summary

    Official Symbol
    Atminprovided by MGI
    Official Full Name
    ATM interactorprovided by MGI
    Primary source
    MGI:MGI:2682328
    See related
    Ensembl:ENSMUSG00000047388
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    gpg6; Asciz; mKIAA0431
    Expression
    Ubiquitous expression in testis adult (RPKM 16.7), cerebellum adult (RPKM 10.6) and 28 other tissues See more
    Orthologs

    Genomic context

    See Atmin in Genome Data Viewer
    Location:
    8; 8 E1
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    106 current GRCm38.p4 (GCF_000001635.24) 8 NC_000074.6 (116943388..116960445)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 8 NC_000074.5 (119467293..119484345)

    Chromosome 8 - NC_000074.6Genomic Context describing neighboring genes Neighboring gene predicted gene, 42045 Neighboring gene COX assembly mitochondrial protein 2 Neighboring gene centromere protein N Neighboring gene RIKEN cDNA 1700030J22 gene Neighboring gene glycine cleavage system protein H (aminomethyl carrier)

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

    GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)

    General gene information

    Markers

    Homology

    Clone Names

    • MGC79206

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    dynein complex binding ISO
    Inferred from Sequence Orthology
    more info
     
    metal ion binding IEA
    Inferred from Electronic Annotation
    more info
     
    nucleic acid binding IEA
    Inferred from Electronic Annotation
    more info
     
    transcription regulatory region DNA binding IDA
    Inferred from Direct Assay
    more info
    PubMed 
    Component Evidence Code Pubs
    nuclear body ISO
    Inferred from Sequence Orthology
    more info
     
    nucleus IEA
    Inferred from Electronic Annotation
    more info
     

    General protein information

    Preferred Names
    ATM interactor
    Names
    ASCIZ
    ATM/ATR-substrate CHEK2-interacting zinc finger protein
    ATM/ATR-substrate CHK2-interacting zinc finger protein
    atmin

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_177700.4NP_808368.3  ATM interactor

      See identical proteins and their annotated locations for NP_808368.3

      Status: VALIDATED

      Source sequence(s)
      BC060631, CJ045227, CJ089804
      Consensus CDS
      CCDS22694.2
      UniProtKB/Swiss-Prot
      Q6P9S1
      Related
      ENSMUSP00000104727.3, ENSMUST00000109099.3
      Conserved Domains (1) summary
      sd00017
      Location:129156
      ZF_C2H2; C2H2 Zn finger [structural motif]

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm38.p4 C57BL/6J

    Genomic

    1. NC_000074.6 Reference GRCm38.p4 C57BL/6J

      Range
      116943388..116960445
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006530927.2XP_006530990.1  ATM interactor isoform X1

      See identical proteins and their annotated locations for XP_006530990.1

      Conserved Domains (1) summary
      sd00017
      Location:102129
      ZF_C2H2; C2H2 Zn finger [structural motif]
    2. XM_006530929.3XP_006530992.1  ATM interactor isoform X3

      Conserved Domains (1) summary
      sd00017
      Location:101128
      ZF_C2H2; C2H2 Zn finger [structural motif]
    3. XM_006530928.2XP_006530991.1  ATM interactor isoform X2

      See identical proteins and their annotated locations for XP_006530991.1

      Conserved Domains (1) summary
      sd00017
      Location:102129
      ZF_C2H2; C2H2 Zn finger [structural motif]
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