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    Atmin ATM interactor [ Mus musculus (house mouse) ]

    Gene ID: 234776, updated on 26-Sep-2022

    Summary

    Official Symbol
    Atminprovided by MGI
    Official Full Name
    ATM interactorprovided by MGI
    Primary source
    MGI:MGI:2682328
    See related
    Ensembl:ENSMUSG00000047388 AllianceGenome:MGI:2682328
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    gpg6; Asciz; mKIAA0431
    Summary
    Enables DNA-binding transcription activator activity, RNA polymerase II-specific and transcription cis-regulatory region binding activity. Involved in positive regulation of transcription by RNA polymerase II. Acts upstream of or within motile cilium assembly; positive regulation of gene expression; and positive regulation of non-motile cilium assembly. Predicted to be located in nuclear body. Predicted to be active in nucleus. Is expressed in several structures, including central nervous system; heart; liver; lung; and retina. Orthologous to human ATMIN (ATM interactor). [provided by Alliance of Genome Resources, Apr 2022]
    Expression
    Ubiquitous expression in testis adult (RPKM 16.7), cerebellum adult (RPKM 10.6) and 28 other tissues See more
    Orthologs
    NEW
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    Try the new Transcript table

    Genomic context

    See Atmin in Genome Data Viewer
    Location:
    8; 8 E1
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    109 current GRCm39 (GCF_000001635.27) 8 NC_000074.7 (117670132..117687184)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 8 NC_000074.6 (116943383..116960445)

    Chromosome 8 - NC_000074.7Genomic Context describing neighboring genes Neighboring gene predicted gene, 42045 Neighboring gene COX assembly mitochondrial protein 2 Neighboring gene centromere protein N Neighboring gene RIKEN cDNA 1700030J22 gene Neighboring gene glycine cleavage system protein H (aminomethyl carrier)

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)

    General gene information

    Markers

    Homology

    Clone Names

    • MGC79206

    Gene Ontology Provided by MGI

    Component Evidence Code Pubs
    located_in nuclear body ISO
    Inferred from Sequence Orthology
    more info
     
    is_active_in nucleus IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 

    General protein information

    Preferred Names
    ATM interactor
    Names
    ASCIZ
    ATM/ATR-substrate CHEK2-interacting zinc finger protein
    ATM/ATR-substrate CHK2-interacting zinc finger protein

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_177700.4NP_808368.3  ATM interactor

      See identical proteins and their annotated locations for NP_808368.3

      Status: VALIDATED

      Source sequence(s)
      BC060631, CJ045227, CJ089804
      Consensus CDS
      CCDS22694.2
      UniProtKB/Swiss-Prot
      Q6P9S1, Q8C311
      Related
      ENSMUSP00000104727.4, ENSMUST00000109099.4
      Conserved Domains (1) summary
      sd00017
      Location:129156
      ZF_C2H2; C2H2 Zn finger [structural motif]

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000074.7 Reference GRCm39 C57BL/6J

      Range
      117670132..117687184
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006530927.4XP_006530990.1  ATM interactor isoform X1

      See identical proteins and their annotated locations for XP_006530990.1

      Conserved Domains (1) summary
      sd00017
      Location:102129
      ZF_C2H2; C2H2 Zn finger [structural motif]
    2. XM_006530929.5XP_006530992.1  ATM interactor isoform X3

      Conserved Domains (1) summary
      sd00017
      Location:101128
      ZF_C2H2; C2H2 Zn finger [structural motif]
    3. XM_006530928.2XP_006530991.1  ATM interactor isoform X2

      See identical proteins and their annotated locations for XP_006530991.1

      Conserved Domains (1) summary
      sd00017
      Location:102129
      ZF_C2H2; C2H2 Zn finger [structural motif]