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    Edc4 enhancer of mRNA decapping 4 [ Mus musculus (house mouse) ]

    Gene ID: 234699, updated on 23-Jun-2021

    Summary

    Official Symbol
    Edc4provided by MGI
    Official Full Name
    enhancer of mRNA decapping 4provided by MGI
    Primary source
    MGI:MGI:2446249
    See related
    Ensembl:ENSMUSG00000036270
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    BC022641
    Summary
    The protein encoded by this gene is thought to promote mRNA decay, and is known to interact with several mRNA decapping proteins. In humans, decreased expression of this gene prevents the accumulation of mRNA decapping proteins to mRNA processing bodies (P-body). Alternative splicing results in multiple protein isoforms. [provided by RefSeq, Jul 2014]
    Expression
    Ubiquitous expression in thymus adult (RPKM 38.7), ovary adult (RPKM 33.6) and 28 other tissues See more
    Orthologs
    NEW
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    Try the new Transcript table

    Genomic context

    See Edc4 in Genome Data Viewer
    Location:
    8; 8 D3
    Exon count:
    29
    Annotation release Status Assembly Chr Location
    109 current GRCm39 (GCF_000001635.27) 8 NC_000074.7 (106607505..106619857)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 8 NC_000074.6 (105880873..105893225)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 8 NC_000074.5 (108404851..108417108)

    Chromosome 8 - NC_000074.7Genomic Context describing neighboring genes Neighboring gene THAP domain containing 11 Neighboring gene nuclear transport factor 2 Neighboring gene neuritin 1-like Neighboring gene protein serine kinase H1

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Targeted (1) 

    Pathways from PubChem

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    PubMed 
    Process Evidence Code Pubs
    involved_in deadenylation-independent decapping of nuclear-transcribed mRNA IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    Component Evidence Code Pubs
    is_active_in P-body IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    located_in P-body ISO
    Inferred from Sequence Orthology
    more info
    PubMed 
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
     
    located_in cytoplasmic ribonucleoprotein granule ISO
    Inferred from Sequence Orthology
    more info
     
    located_in nucleoplasm ISO
    Inferred from Sequence Orthology
    more info
     
    located_in nucleus ISO
    Inferred from Sequence Orthology
    more info
     

    General protein information

    Preferred Names
    enhancer of mRNA-decapping protein 4

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001301100.1NP_001288029.1  enhancer of mRNA-decapping protein 4 isoform 1

      See identical proteins and their annotated locations for NP_001288029.1

      Status: REVIEWED

      Description
      Transcript Variant: This variant (1) represents the longer transcript and encodes the longer isoform (1).
      Source sequence(s)
      AK146527, BB872146, BC052514, BC053081, BU709340, CB249312, DV647826
      Consensus CDS
      CCDS80923.1
      UniProtKB/Swiss-Prot
      Q3UJB9
      UniProtKB/TrEMBL
      G5E896
      Related
      ENSMUSP00000039134.10, ENSMUST00000040254.16
      Conserved Domains (3) summary
      pfam16529
      Location:114440
      Ge1_WD40; WD40 region of Ge1, enhancer of mRNA-decapping protein
      sd00039
      Location:304343
      7WD40; WD40 repeat [structural motif]
      cl02567
      Location:260409
      WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
    2. NM_181594.3NP_853625.1  enhancer of mRNA-decapping protein 4 isoform 2

      See identical proteins and their annotated locations for NP_853625.1

      Status: REVIEWED

      Description
      Transcript Variant: This variant (2) uses an alternate in-frame splice site in the coding region, compared to variant 1. This results in a shorter protein (isoform 2), compared to isoform 1.
      Source sequence(s)
      AK152963, BB872146, BC052514, BC053081
      Consensus CDS
      CCDS52662.1
      UniProtKB/Swiss-Prot
      Q3UJB9
      UniProtKB/TrEMBL
      A0A0R4J1Q0
      Related
      ENSMUSP00000113854.2, ENSMUST00000119261.8
      Conserved Domains (3) summary
      pfam16529
      Location:114440
      Ge1_WD40; WD40 region of Ge1, enhancer of mRNA-decapping protein
      sd00039
      Location:304343
      7WD40; WD40 repeat [structural motif]
      cl02567
      Location:260409
      WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000074.7 Reference GRCm39 C57BL/6J

      Range
      106607505..106619857
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006530902.2XP_006530965.1  enhancer of mRNA-decapping protein 4 isoform X2

      Conserved Domains (2) summary
      sd00039
      Location:304343
      7WD40; WD40 repeat [structural motif]
      pfam16529
      Location:114440
      Ge1_WD40; WD40 region of Ge1, enhancer of mRNA-decapping protein
    2. XM_030243504.1XP_030099364.1  enhancer of mRNA-decapping protein 4 isoform X5

      Conserved Domains (2) summary
      sd00039
      Location:304343
      7WD40; WD40 repeat [structural motif]
      pfam16529
      Location:114440
      Ge1_WD40; WD40 region of Ge1, enhancer of mRNA-decapping protein
    3. XM_006530901.3XP_006530964.1  enhancer of mRNA-decapping protein 4 isoform X1

      Conserved Domains (2) summary
      sd00039
      Location:304343
      7WD40; WD40 repeat [structural motif]
      pfam16529
      Location:114440
      Ge1_WD40; WD40 region of Ge1, enhancer of mRNA-decapping protein
    4. XM_006530904.3XP_006530967.1  enhancer of mRNA-decapping protein 4 isoform X4

      Conserved Domains (2) summary
      sd00039
      Location:304343
      7WD40; WD40 repeat [structural motif]
      pfam16529
      Location:114440
      Ge1_WD40; WD40 region of Ge1, enhancer of mRNA-decapping protein
    5. XM_017312743.2XP_017168232.1  enhancer of mRNA-decapping protein 4 isoform X3

      Conserved Domains (2) summary
      sd00039
      Location:304343
      7WD40; WD40 repeat [structural motif]
      pfam16529
      Location:114440
      Ge1_WD40; WD40 region of Ge1, enhancer of mRNA-decapping protein
    6. XM_036153972.1XP_036009865.1  enhancer of mRNA-decapping protein 4 isoform X6

      Conserved Domains (2) summary
      sd00039
      Location:304343
      7WD40; WD40 repeat [structural motif]
      pfam16529
      Location:114440
      Ge1_WD40; WD40 region of Ge1, enhancer of mRNA-decapping protein
    7. XM_006530905.4XP_006530968.1  enhancer of mRNA-decapping protein 4 isoform X7

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