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    D230025D16Rik RIKEN cDNA D230025D16 gene [ Mus musculus (house mouse) ]

    Gene ID: 234678, updated on 31-Jan-2019

    Summary

    Official Symbol
    D230025D16Rikprovided by MGI
    Official Full Name
    RIKEN cDNA D230025D16 geneprovided by MGI
    Primary source
    MGI:MGI:2443049
    See related
    Ensembl:ENSMUSG00000031889
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Lin10; BC006874
    Expression
    Ubiquitous expression in lung adult (RPKM 24.9), liver adult (RPKM 16.8) and 28 other tissues See more
    Orthologs

    Genomic context

    See D230025D16Rik in Genome Data Viewer
    Location:
    8; 8 D3
    Exon count:
    16
    Annotation release Status Assembly Chr Location
    106 current GRCm38.p4 (GCF_000001635.24) 8 NC_000074.6 (105225146..105253053)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 8 NC_000074.5 (107749088..107776953)

    Chromosome 8 - NC_000074.6Genomic Context describing neighboring genes Neighboring gene carboxylesterase 4A Neighboring gene core binding factor beta Neighboring gene expressed sequence AI225912 Neighboring gene UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 9 Neighboring gene TNFRSF1A-associated via death domain Neighboring gene F-box and leucine-rich repeat protein 8

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    General gene information

    Markers

    Homology

    Clone Names

    • MGC6480

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    PDZ domain binding ISO
    Inferred from Sequence Orthology
    more info
     
    glutamate receptor binding ISO
    Inferred from Sequence Orthology
    more info
     
    Process Evidence Code Pubs
    Golgi to plasma membrane protein transport IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    Golgi to plasma membrane protein transport ISO
    Inferred from Sequence Orthology
    more info
     
    Component Evidence Code Pubs
    dendrite IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    dendrite ISO
    Inferred from Sequence Orthology
    more info
     
    membrane ISO
    Inferred from Sequence Orthology
    more info
     
    synaptic vesicle membrane IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    synaptic vesicle membrane ISO
    Inferred from Sequence Orthology
    more info
     
    trans-Golgi network IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    trans-Golgi network ISO
    Inferred from Sequence Orthology
    more info
     

    General protein information

    Preferred Names
    UPF0183 protein C16orf70 homolog
    Names
    lin-10 homolog

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_145604.2NP_663579.2  UPF0183 protein C16orf70 homolog

      See identical proteins and their annotated locations for NP_663579.2

      Status: VALIDATED

      Source sequence(s)
      AC124713, AK213296, CN703950, DV649781
      Consensus CDS
      CCDS22593.1
      UniProtKB/Swiss-Prot
      Q922R1
      Related
      ENSMUSP00000034361.3, ENSMUST00000034361.9
      Conserved Domains (1) summary
      pfam03676
      Location:15407
      UPF0183; Uncharacterized protein family (UPF0183)

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm38.p4 C57BL/6J

    Genomic

    1. NC_000074.6 Reference GRCm38.p4 C57BL/6J

      Range
      105225146..105253053
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006530888.2XP_006530951.1  UPF0183 protein C16orf70 homolog isoform X2

      Conserved Domains (1) summary
      pfam03676
      Location:2256
      UPF0183; uncharacterized protein family (UPF0183)
    2. XM_006530887.2XP_006530950.1  UPF0183 protein C16orf70 homolog isoform X1

      Conserved Domains (1) summary
      pfam03676
      Location:15437
      UPF0183; uncharacterized protein family (UPF0183)
    3. XM_006530889.2XP_006530952.1  UPF0183 protein C16orf70 homolog isoform X3

      Conserved Domains (1) summary
      pfam03676
      Location:2226
      UPF0183; uncharacterized protein family (UPF0183)
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