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    Kctd13 potassium channel tetramerisation domain containing 13 [ Mus musculus (house mouse) ]

    Gene ID: 233877, updated on 23-Jun-2021

    Summary

    Official Symbol
    Kctd13provided by MGI
    Official Full Name
    potassium channel tetramerisation domain containing 13provided by MGI
    Primary source
    MGI:MGI:1923739
    See related
    Ensembl:ENSMUSG00000030685
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Pd; Po; Pdip1; D5Mgi4; Poldip1; AV259508; PDIP1alpha; 1500003N18Rik
    Expression
    Ubiquitous expression in cortex adult (RPKM 27.2), frontal lobe adult (RPKM 25.0) and 27 other tissues See more
    Orthologs
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    Genomic context

    See Kctd13 in Genome Data Viewer
    Location:
    7; 7 F3
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    109 current GRCm39 (GCF_000001635.27) 7 NC_000073.7 (126528051..126544781)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 7 NC_000073.6 (126928840..126947897)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 7 NC_000073.5 (134072393..134089123)

    Chromosome 7 - NC_000073.7Genomic Context describing neighboring genes Neighboring gene TAO kinase 2 Neighboring gene transmembrane protein 219 Neighboring gene predicted gene, 23445 Neighboring gene aspartate beta-hydroxylase domain containing 1 Neighboring gene seizure related 6 homolog like 2

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Targeted (4)  1 citation
    • Endonuclease-mediated (1) 

    General gene information

    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables identical protein binding IPI
    Inferred from Physical Interaction
    more info
    PubMed 
    enables identical protein binding ISO
    Inferred from Sequence Orthology
    more info
     
    enables protein domain specific binding ISO
    Inferred from Sequence Orthology
    more info
     
    enables small GTPase binding ISO
    Inferred from Sequence Orthology
    more info
     
    contributes_to ubiquitin-protein transferase activity IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    contributes_to ubiquitin-protein transferase activity ISO
    Inferred from Sequence Orthology
    more info
     
    Component Evidence Code Pubs
    part_of Cul3-RING ubiquitin ligase complex IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    part_of Cul3-RING ubiquitin ligase complex ISO
    Inferred from Sequence Orthology
    more info
     
    located_in nuclear body ISO
    Inferred from Sequence Orthology
    more info
     
    located_in nucleoplasm ISO
    Inferred from Sequence Orthology
    more info
     
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
     

    General protein information

    Preferred Names
    BTB/POZ domain-containing adapter for CUL3-mediated RhoA degradation protein 1
    Names
    BTB/POZ domain-containing protein KCTD13
    polymerase delta-interacting protein 1
    tumor necrosis factor alpha-inducible protein PDIP1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_172747.2NP_766335.1  BTB/POZ domain-containing adapter for CUL3-mediated RhoA degradation protein 1

      See identical proteins and their annotated locations for NP_766335.1

      Status: PROVISIONAL

      Source sequence(s)
      AK075722
      Consensus CDS
      CCDS21851.1
      UniProtKB/Swiss-Prot
      Q8BGV7
      Related
      ENSMUSP00000032924.6, ENSMUST00000032924.6
      Conserved Domains (2) summary
      smart00225
      Location:42141
      BTB; Broad-Complex, Tramtrack and Bric a brac
      cl02518
      Location:43133
      BTB; BTB/POZ domain

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000073.7 Reference GRCm39 C57BL/6J

      Range
      126528051..126544781
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
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