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    Hirip3 HIRA interacting protein 3 [ Mus musculus (house mouse) ]

    Gene ID: 233876, updated on 26-Sep-2022

    Summary

    Official Symbol
    Hirip3provided by MGI
    Official Full Name
    HIRA interacting protein 3provided by MGI
    Primary source
    MGI:MGI:2142364
    See related
    Ensembl:ENSMUSG00000042606 AllianceGenome:MGI:2142364
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    B130036O03
    Summary
    Predicted to be located in nucleolus and nucleoplasm. Predicted to be active in nucleus. Is expressed in central nervous system; genitourinary system; and intestine. Orthologous to human HIRIP3 (HIRA interacting protein 3). [provided by Alliance of Genome Resources, Apr 2022]
    Expression
    Broad expression in CNS E11.5 (RPKM 42.6), liver E14 (RPKM 25.5) and 16 other tissues See more
    Orthologs
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    Genomic context

    See Hirip3 in Genome Data Viewer
    Location:
    7; 7 F3
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    109 current GRCm39 (GCF_000001635.27) 7 NC_000073.7 (126461144..126464549)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 7 NC_000073.6 (126861929..126865377)

    Chromosome 7 - NC_000073.7Genomic Context describing neighboring genes Neighboring gene RIKEN cDNA 4930451I11 gene Neighboring gene double C2, alpha Neighboring gene INO80 complex subunit E Neighboring gene TAO kinase 2 Neighboring gene transmembrane protein 219 Neighboring gene predicted gene, 23445

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Targeted (2) 
    • Endonuclease-mediated (1) 

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
     
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
     
    Component Evidence Code Pubs
    located_in nucleolus ISO
    Inferred from Sequence Orthology
    more info
     
    located_in nucleoplasm ISO
    Inferred from Sequence Orthology
    more info
     
    is_active_in nucleus IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    located_in nucleus ISO
    Inferred from Sequence Orthology
    more info
     

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_172746.4NP_766334.1  HIRA-interacting protein 3

      See identical proteins and their annotated locations for NP_766334.1

      Status: VALIDATED

      Source sequence(s)
      AC124505
      Consensus CDS
      CCDS21849.1
      UniProtKB/Swiss-Prot
      Q3TSF3, Q8BLH7
      Related
      ENSMUSP00000035535.4, ENSMUST00000037248.10
      Conserved Domains (1) summary
      smart01082
      Location:529565
      CHZ; Histone chaperone domain CHZ

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000073.7 Reference GRCm39 C57BL/6J

      Range
      126461144..126464549
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_030242529.1XP_030098389.1  HIRA-interacting protein 3 isoform X1

      Conserved Domains (1) summary
      smart01082
      Location:383419
      CHZ; Histone chaperone domain CHZ

    RNA

    1. XR_001785541.3 RNA Sequence