Format

Send to:

Choose Destination
    • Showing Current items.

    Ino80e INO80 complex subunit E [ Mus musculus (house mouse) ]

    Gene ID: 233875, updated on 23-Jun-2021

    Summary

    Official Symbol
    Ino80eprovided by MGI
    Official Full Name
    INO80 complex subunit Eprovided by MGI
    Primary source
    MGI:MGI:2141881
    See related
    Ensembl:ENSMUSG00000030689
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Ccdc85; Ccdc95; AI225782; AI854876
    Expression
    Ubiquitous expression in thymus adult (RPKM 20.5), ovary adult (RPKM 17.3) and 28 other tissues See more
    Orthologs
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    See Ino80e in Genome Data Viewer
    Location:
    7; 7 F3
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    109 current GRCm39 (GCF_000001635.27) 7 NC_000073.7 (126450756..126461544, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 7 NC_000073.6 (126851584..126862372, complement)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 7 NC_000073.5 (133995947..134004977, complement)

    Chromosome 7 - NC_000073.7Genomic Context describing neighboring genes Neighboring gene TLC domain containing 3B Neighboring gene RIKEN cDNA 4930451I11 gene Neighboring gene double C2, alpha Neighboring gene HIRA interacting protein 3 Neighboring gene TAO kinase 2 Neighboring gene transmembrane protein 219 Neighboring gene predicted gene, 23445

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Targeted (1) 

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Homology

    Clone Names

    • MGC31515

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
     
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
     
    Component Evidence Code Pubs
    part_of Ino80 complex IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    part_of Ino80 complex ISO
    Inferred from Sequence Orthology
    more info
     
    located_in nucleolus ISO
    Inferred from Sequence Orthology
    more info
     
    located_in nucleoplasm ISO
    Inferred from Sequence Orthology
    more info
     

    General protein information

    Preferred Names
    INO80 complex subunit E
    Names
    NO80 complex subunit E
    coiled-coil domain containing 95

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001370765.1NP_001357694.1  INO80 complex subunit E isoform 1

      Status: VALIDATED

      Source sequence(s)
      AC124505
      Related
      ENSMUST00000125624.8
    2. NM_153580.1NP_705808.1  INO80 complex subunit E isoform 2

      See identical proteins and their annotated locations for NP_705808.1

      Status: VALIDATED

      Source sequence(s)
      BC026475
      Consensus CDS
      CCDS21848.1
      UniProtKB/TrEMBL
      Q8R359
      Related
      ENSMUSP00000049851.8, ENSMUST00000050833.14

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000073.7 Reference GRCm39 C57BL/6J

      Range
      126450756..126461544 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006507733.4XP_006507796.1  INO80 complex subunit E isoform X7

    2. XM_036153016.1XP_036008909.1  INO80 complex subunit E isoform X6

    3. XM_011241778.3XP_011240080.1  INO80 complex subunit E isoform X5

      See identical proteins and their annotated locations for XP_011240080.1

      Conserved Domains (1) summary
      pfam08537
      Location:77161
      NBP1; Fungal Nap binding protein NBP1
    4. XM_006507731.1XP_006507794.1  INO80 complex subunit E isoform X2

      Related
      ENSMUSP00000145893.2, ENSMUST00000206968.2
      Conserved Domains (1) summary
      pfam08537
      Location:77161
      NBP1; Fungal Nap binding protein NBP1
    5. XM_006507730.1XP_006507793.1  INO80 complex subunit E isoform X1

    6. XM_011241777.3XP_011240079.1  INO80 complex subunit E isoform X4

    7. XM_006507732.3XP_006507795.1  INO80 complex subunit E isoform X3

      See identical proteins and their annotated locations for XP_006507795.1

    RNA

    1. XR_378240.4 RNA Sequence

      Related
      ENSMUST00000106343.3
    2. XR_003946467.1 RNA Sequence

    3. XR_003946466.1 RNA Sequence

    4. XR_378241.5 RNA Sequence

    5. XR_378239.1 RNA Sequence

    Support Center