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    D430042O09Rik RIKEN cDNA D430042O09 gene [ Mus musculus (house mouse) ]

    Gene ID: 233865, updated on 31-Jan-2019

    Summary

    Official Symbol
    D430042O09Rikprovided by MGI
    Official Full Name
    RIKEN cDNA D430042O09 geneprovided by MGI
    Primary source
    MGI:MGI:2442760
    See related
    Ensembl:ENSMUSG00000032743
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Kiaa0556
    Expression
    Ubiquitous expression in testis adult (RPKM 13.6), ovary adult (RPKM 5.7) and 28 other tissues See more
    Orthologs

    Genomic context

    See D430042O09Rik in Genome Data Viewer
    Location:
    7; 7 F3
    Exon count:
    32
    Annotation release Status Assembly Chr Location
    106 current GRCm38.p4 (GCF_000001635.24) 7 NC_000073.6 (125707857..125874797)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 7 NC_000073.5 (132851390..133018311)

    Chromosome 7 - NC_000073.6Genomic Context describing neighboring genes Neighboring gene interleukin 21 receptor Neighboring gene general transcription factor III C 1 Neighboring gene GSG1-like Neighboring gene predicted gene, 30807

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Gene trapped (1) 
    • Endonuclease-mediated (1) 

    General gene information

    Markers

    Homology

    Clone Names

    • MGC31549

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    molecular_function ND
    No biological Data available
    more info
     
    Process Evidence Code Pubs
    biological_process ND
    No biological Data available
    more info
     
    Component Evidence Code Pubs
    cell projection IEA
    Inferred from Electronic Annotation
    more info
     
    cytoplasm IEA
    Inferred from Electronic Annotation
    more info
     
    cytoskeleton IEA
    Inferred from Electronic Annotation
    more info
     

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001081022.2NP_001074491.1  protein KIAA0556 isoform 1

      See identical proteins and their annotated locations for NP_001074491.1

      Status: VALIDATED

      Source sequence(s)
      AC127333, AC150648
      Consensus CDS
      CCDS40123.1
      UniProtKB/Swiss-Prot
      Q8C753
      Related
      ENSMUSP00000065744.6, ENSMUST00000069660.12
      Conserved Domains (1) summary
      pfam14652
      Location:12051524
      DUF4457; Domain of unknown function (DUF4457)
    2. NM_001358287.1NP_001345216.1  protein KIAA0556 isoform 2

      Status: VALIDATED

      Source sequence(s)
      AC127333, AC150648
      Conserved Domains (1) summary
      pfam14652
      Location:11791498
      DUF4457; Domain of unknown function (DUF4457)

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm38.p4 C57BL/6J

    Genomic

    1. NC_000073.6 Reference GRCm38.p4 C57BL/6J

      Range
      125707857..125874797
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006507717.2XP_006507780.1  protein KIAA0556 isoform X4

      UniProtKB/TrEMBL
      F6XQI1
      Related
      ENSMUSP00000118668.2, ENSMUST00000124223.7
      Conserved Domains (1) summary
      pfam14652
      Location:11791498
      DUF4457; Domain of unknown function (DUF4457)
    2. XM_011241771.2XP_011240073.1  protein KIAA0556 isoform X2

      Conserved Domains (1) summary
      pfam14652
      Location:12141533
      DUF4457; Domain of unknown function (DUF4457)
    3. XM_006507718.2XP_006507781.1  protein KIAA0556 isoform X4

      See identical proteins and their annotated locations for XP_006507781.1

      UniProtKB/TrEMBL
      F6XQI1
      Conserved Domains (1) summary
      pfam14652
      Location:11791498
      DUF4457; Domain of unknown function (DUF4457)
    4. XM_017322208.1XP_017177697.1  protein KIAA0556 isoform X6

    5. XM_017322207.1XP_017177696.1  protein KIAA0556 isoform X1

    6. XM_011241774.2XP_011240076.1  protein KIAA0556 isoform X5

      Conserved Domains (1) summary
      pfam14652
      Location:11501469
      DUF4457; Domain of unknown function (DUF4457)
    7. XM_006507716.3XP_006507779.1  protein KIAA0556 isoform X3

      Conserved Domains (1) summary
      pfam14652
      Location:11881507
      DUF4457; Domain of unknown function (DUF4457)
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