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    Tmem41b transmembrane protein 41B [ Mus musculus (house mouse) ]

    Gene ID: 233724, updated on 2-Oct-2018

    Summary

    Official Symbol
    Tmem41bprovided by MGI
    Official Full Name
    transmembrane protein 41Bprovided by MGI
    Primary source
    MGI:MGI:1289225
    See related
    Ensembl:ENSMUSG00000047554 Vega:OTTMUSG00000028635
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    AU018901; D7Ertd70e; D7Ertd743e; 1500015G02Rik; 1500031M19Rik
    Expression
    Ubiquitous expression in placenta adult (RPKM 10.3), cerebellum adult (RPKM 8.5) and 28 other tissues See more
    Orthologs

    Genomic context

    See Tmem41b in Genome Data Viewer
    Location:
    7 E3; 7 57.69 cM
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    106 current GRCm38.p4 (GCF_000001635.24) 7 NC_000073.6 (109972187..109986230, complement)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 7 NC_000073.5 (117115701..117129744, complement)

    Chromosome 7 - NC_000073.6Genomic Context describing neighboring genes Neighboring gene signal peptide, CUB domain, EGF-like 2 Neighboring gene DENN/MADD domain containing 5A Neighboring gene RIKEN cDNA 1600010M07 gene Neighboring gene importin 7 Neighboring gene small nucleolar RNA, H/ACA box 23

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Gene trapped (1) 

    General gene information

    Markers

    Homology

    Clone Names

    • MGC38847

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    molecular_function ND
    No biological Data available
    more info
     
    Process Evidence Code Pubs
    autophagosome assembly ISO
    Inferred from Sequence Orthology
    more info
     
    nervous system development IEA
    Inferred from Electronic Annotation
    more info
     
    Component Evidence Code Pubs
    endoplasmic reticulum membrane ISO
    Inferred from Sequence Orthology
    more info
     
    integral component of membrane IEA
    Inferred from Electronic Annotation
    more info
     
    membrane IEA
    Inferred from Electronic Annotation
    more info
     

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_153525.5NP_705745.3  transmembrane protein 41B

      See identical proteins and their annotated locations for NP_705745.3

      Status: PROVISIONAL

      Source sequence(s)
      AC140235
      Consensus CDS
      CCDS21742.1
      UniProtKB/Swiss-Prot
      Q8K1A5
      Related
      ENSMUSP00000091641.5, OTTMUSP00000036240, ENSMUST00000094097.11, OTTMUST00000070950
      Conserved Domains (1) summary
      pfam09335
      Location:129248
      SNARE_assoc; SNARE associated Golgi protein

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm38.p4 C57BL/6J

    Genomic

    1. NC_000073.6 Reference GRCm38.p4 C57BL/6J

      Range
      109972187..109986230 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
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