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    Scaf1 SR-related CTD-associated factor 1 [ Mus musculus (house mouse) ]

    Gene ID: 233208, updated on 22-Aug-2021

    Summary

    Official Symbol
    Scaf1provided by MGI
    Official Full Name
    SR-related CTD-associated factor 1provided by MGI
    Primary source
    MGI:MGI:2141980
    See related
    Ensembl:ENSMUSG00000038406
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    SR-A1; AI480556
    Expression
    Ubiquitous expression in adrenal adult (RPKM 47.0), ovary adult (RPKM 42.7) and 28 other tissues See more
    Orthologs
    NEW
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    Genomic context

    See Scaf1 in Genome Data Viewer
    Location:
    7; 7 B3
    Exon count:
    13
    Annotation release Status Assembly Chr Location
    109 current GRCm39 (GCF_000001635.27) 7 NC_000073.7 (44652372..44665673, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 7 NC_000073.6 (45002946..45016404, complement)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 7 NC_000073.5 (52258320..52271619, complement)

    Chromosome 7 - NC_000073.7Genomic Context describing neighboring genes Neighboring gene predicted gene 15545 Neighboring gene BCL2-like 12 (proline rich) Neighboring gene interferon regulatory factor 3 Neighboring gene microRNA 7054 Neighboring gene related RAS viral (r-ras) oncogene Neighboring gene proline rich 12

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Endonuclease-mediated (1) 

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Homology

    Clone Names

    • MGC109685

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables RNA binding IEA
    Inferred from Electronic Annotation
    more info
     
    enables RNA polymerase II C-terminal domain binding IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    enables RNA polymerase II C-terminal domain binding ISO
    Inferred from Sequence Orthology
    more info
     
    enables protein domain specific binding ISO
    Inferred from Sequence Orthology
    more info
     
    Process Evidence Code Pubs
    acts_upstream_of_or_within RNA splicing IEA
    Inferred from Electronic Annotation
    more info
     
    involved_in mRNA processing ISO
    Inferred from Sequence Orthology
    more info
     
    acts_upstream_of_or_within transcription by RNA polymerase II ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in transcription by RNA polymerase II ISO
    Inferred from Sequence Orthology
    more info
     
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
     

    General protein information

    Preferred Names
    splicing factor, arginine/serine-rich 19
    Names
    SR-related and CTD-associated factor 1
    serine arginine-rich pre-mRNA splicing factor SR-A1

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001008422.1NP_001008422.1  splicing factor, arginine/serine-rich 19

      See identical proteins and their annotated locations for NP_001008422.1

      Status: PROVISIONAL

      Source sequence(s)
      BC085153
      Consensus CDS
      CCDS21225.1
      UniProtKB/Swiss-Prot
      Q5U4C3
      Related
      ENSMUSP00000082501.3, ENSMUST00000085383.11

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000073.7 Reference GRCm39 C57BL/6J

      Range
      44652372..44665673 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_011250855.4XP_011249157.1  splicing factor, arginine/serine-rich 19 isoform X1

      See identical proteins and their annotated locations for XP_011249157.1

      UniProtKB/Swiss-Prot
      Q5U4C3
      Related
      ENSMUSP00000148251.2, ENSMUST00000211735.2
    2. XM_006540821.5XP_006540884.1  splicing factor, arginine/serine-rich 19 isoform X1

      See identical proteins and their annotated locations for XP_006540884.1

      UniProtKB/Swiss-Prot
      Q5U4C3
    3. XM_030242466.2XP_030098326.1  splicing factor, arginine/serine-rich 19 isoform X1

    RNA

    1. XR_003946455.2 RNA Sequence

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