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    U2af1l4 U2 small nuclear RNA auxiliary factor 1-like 4 [ Mus musculus (house mouse) ]

    Gene ID: 233073, updated on 2-Oct-2018

    Summary

    Official Symbol
    U2af1l4provided by MGI
    Official Full Name
    U2 small nuclear RNA auxiliary factor 1-like 4provided by MGI
    Primary source
    MGI:MGI:2678374
    See related
    Ensembl:ENSMUSG00000078765 Vega:OTTMUSG00000059365
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    U2af26; AA407033; AF419339; AI451269; AW553050
    Expression
    Ubiquitous expression in adrenal adult (RPKM 30.6), duodenum adult (RPKM 22.1) and 28 other tissues See more
    Orthologs

    Genomic context

    See U2af1l4 in Genome Data Viewer
    Location:
    7; 7 B1
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    106 current GRCm38.p4 (GCF_000001635.24) 7 NC_000073.6 (30563340..30565364)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 7 NC_000073.5 (31348359..31350383)

    Chromosome 7 - NC_000073.6Genomic Context describing neighboring genes Neighboring gene lin-37 homolog (C. elegans) Neighboring gene presenilin enhancer gamma secretase subunit Neighboring gene IGF-like family receptor 1 Neighboring gene lysine (K)-specific methyltransferase 2B

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

    GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)

    Pathways from BioSystems

    General gene information

    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    pre-mRNA 3'-splice site binding IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    Process Evidence Code Pubs
    mRNA splicing, via spliceosome IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    Component Evidence Code Pubs
    U2AF IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    spliceosomal complex IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 

    General protein information

    Preferred Names
    splicing factor U2AF 26 kDa subunit
    Names
    U2 auxiliary factor 26
    U2 small nuclear RNA auxiliary factor 1-like protein 4
    U2AF1-like 4
    auxiliary factor 26

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_170760.3NP_739566.1  splicing factor U2AF 26 kDa subunit

      See identical proteins and their annotated locations for NP_739566.1

      Status: PROVISIONAL

      Source sequence(s)
      AC167970
      Consensus CDS
      CCDS21100.1
      UniProtKB/Swiss-Prot
      Q8BGJ9
      Related
      ENSMUSP00000039406.9, OTTMUSP00000052288, ENSMUST00000043273.15, OTTMUST00000094114
      Conserved Domains (2) summary
      cd12538
      Location:43146
      RRM_U2AF35; RNA recognition motif in U2 small nuclear ribonucleoprotein auxiliary factor U2AF 35 kDa subunit (U2AF35)
      pfam00642
      Location:149175
      zf-CCCH; Zinc finger C-x8-C-x5-C-x3-H type (and similar)

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm38.p4 C57BL/6J

    Genomic

    1. NC_000073.6 Reference GRCm38.p4 C57BL/6J

      Range
      30563340..30565364
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
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