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    Zfp574 zinc finger protein 574 [ Mus musculus (house mouse) ]

    Gene ID: 232976, updated on 23-Jun-2021

    Summary

    Official Symbol
    Zfp574provided by MGI
    Official Full Name
    zinc finger protein 574provided by MGI
    Primary source
    MGI:MGI:2442951
    See related
    Ensembl:ENSMUSG00000045252
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Znf574; A630056B21Rik
    Expression
    Broad expression in testis adult (RPKM 59.4), ovary adult (RPKM 14.9) and 24 other tissues See more
    Orthologs
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    Genomic context

    See Zfp574 in Genome Data Viewer
    Location:
    7; 7 A3
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    109 current GRCm39 (GCF_000001635.27) 7 NC_000073.7 (24775099..24782917)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 7 NC_000073.6 (25075674..25083492)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 7 NC_000073.5 (25862224..25868511)

    Chromosome 7 - NC_000073.7Genomic Context describing neighboring genes Neighboring gene microRNA 7046 Neighboring gene Rab acceptor 1 (prenylated) Neighboring gene ATPase, Na+/K+ transporting, alpha 3 polypeptide Neighboring gene microRNA 7047 Neighboring gene glutamate receptor, ionotropic, kainate 5 (gamma 2) Neighboring gene POU domain, class 2, transcription factor 2 Neighboring gene microRNA 6537 Neighboring gene RIKEN cDNA D930028M14 gene

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
     
    enables DNA-binding transcription activator activity, RNA polymerase II-specific IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    enables metal ion binding IEA
    Inferred from Electronic Annotation
    more info
     
    Process Evidence Code Pubs
    involved_in regulation of transcription by RNA polymerase II IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    Component Evidence Code Pubs
    is_active_in nucleus IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001168506.2NP_001161978.1  zinc finger protein 574

      See identical proteins and their annotated locations for NP_001161978.1

      Status: VALIDATED

      Source sequence(s)
      AC125468, AK143997, BC059044
      Consensus CDS
      CCDS20971.1
      UniProtKB/Swiss-Prot
      Q8BY46
      Conserved Domains (2) summary
      COG5048
      Location:498852
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:500520
      ZF_C2H2; C2H2 Zn finger [structural motif]
    2. NM_175477.5NP_780686.1  zinc finger protein 574

      See identical proteins and their annotated locations for NP_780686.1

      Status: VALIDATED

      Source sequence(s)
      AC125468, AK143997, BC059044, BY087218
      Consensus CDS
      CCDS20971.1
      UniProtKB/Swiss-Prot
      Q8BY46
      Related
      ENSMUSP00000057817.10, ENSMUST00000053410.11
      Conserved Domains (2) summary
      COG5048
      Location:498852
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:500520
      ZF_C2H2; C2H2 Zn finger [structural motif]

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000073.7 Reference GRCm39 C57BL/6J

      Range
      24775099..24782917
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006539850.3XP_006539913.1  zinc finger protein 574 isoform X1

      Conserved Domains (2) summary
      COG5048
      Location:541895
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:543563
      ZF_C2H2; C2H2 Zn finger [structural motif]
    2. XM_006539852.5XP_006539915.1  zinc finger protein 574 isoform X2

      See identical proteins and their annotated locations for XP_006539915.1

      UniProtKB/Swiss-Prot
      Q8BY46
      Conserved Domains (2) summary
      COG5048
      Location:498852
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:500520
      ZF_C2H2; C2H2 Zn finger [structural motif]
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