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    Hmces 5-hydroxymethylcytosine (hmC) binding, ES cell specific [ Mus musculus (house mouse) ]

    Gene ID: 232210, updated on 31-Jan-2019

    Summary

    Official Symbol
    Hmcesprovided by MGI
    Official Full Name
    5-hydroxymethylcytosine (hmC) binding, ES cell specificprovided by MGI
    Primary source
    MGI:MGI:1914053
    See related
    Ensembl:ENSMUSG00000030060
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Srap1; C85376; 8430410A17Rik
    Expression
    Ubiquitous expression in limb E14.5 (RPKM 8.7), CNS E18 (RPKM 8.2) and 28 other tissues See more
    Orthologs

    Genomic context

    See Hmces in Genome Data Viewer
    Location:
    6; 6 D1
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    106 current GRCm38.p4 (GCF_000001635.24) 6 NC_000072.6 (87913907..87936619)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 6 NC_000072.5 (87863970..87886608)

    Chromosome 6 - NC_000072.6Genomic Context describing neighboring genes Neighboring gene cellular nucleic acid binding protein Neighboring gene coatomer protein complex, subunit gamma 1 Neighboring gene eukaryotic translation elongation factor 1 alpha 1 pseudogene Neighboring gene ribosomal protein S19, pseudogene 9 Neighboring gene H1 histone family, member X

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

    Related articles in PubMed

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)

    General gene information

    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    DNA binding IEA
    Inferred from Electronic Annotation
    more info
     
    hydrolase activity IEA
    Inferred from Electronic Annotation
    more info
     
    molecular_function ND
    No biological Data available
    more info
     
    peptidase activity IEA
    Inferred from Electronic Annotation
    more info
     
    Process Evidence Code Pubs
    biological_process ND
    No biological Data available
    more info
     
    proteolysis IEA
    Inferred from Electronic Annotation
    more info
     
    Component Evidence Code Pubs
    cellular_component ND
    No biological Data available
    more info
     

    General protein information

    Preferred Names
    embryonic stem cell-specific 5-hydroxymethylcytosine-binding protein
    Names
    ES cell-specific 5hmC-binding protein
    SRAP domain-containing protein 1
    UPF0361 protein C3orf37 homolog
    putative peptidase SRAPD1

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_173737.2NP_776098.1  embryonic stem cell-specific 5-hydroxymethylcytosine-binding protein

      See identical proteins and their annotated locations for NP_776098.1

      Status: PROVISIONAL

      Source sequence(s)
      BC024401
      Consensus CDS
      CCDS39551.1
      UniProtKB/Swiss-Prot
      Q8R1M0
      Related
      ENSMUSP00000032141.7, ENSMUST00000032141.13
      Conserved Domains (1) summary
      pfam02586
      Location:4261
      SRAP; SOS response associated peptidase (SRAP)

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm38.p4 C57BL/6J

    Genomic

    1. NC_000072.6 Reference GRCm38.p4 C57BL/6J

      Range
      87913907..87936619
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    RNA

    1. XR_001785121.1 RNA Sequence

    2. XR_377441.3 RNA Sequence

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