Format

Send to:

Choose Destination
    • Showing Current items.

    Smyd5 SET and MYND domain containing 5 [ Mus musculus (house mouse) ]

    Gene ID: 232187, updated on 4-Feb-2018

    Summary

    Official Symbol
    Smyd5provided by MGI
    Official Full Name
    SET and MYND domain containing 5provided by MGI
    Primary source
    MGI:MGI:108048
    See related
    Ensembl:ENSMUSG00000033706 Vega:OTTMUSG00000017438
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Rrg1; Rai15; NN8-4AG; AW536703
    Expression
    Ubiquitous expression in CNS E18 (RPKM 20.8), limb E14.5 (RPKM 19.3) and 28 other tissues See more
    Orthologs

    Genomic context

    See Smyd5 in Genome Data Viewer
    Location:
    6 C3; 6 37.44 cM
    Exon count:
    13
    Annotation release Status Assembly Chr Location
    106 current GRCm38.p4 (GCF_000001635.24) 6 NC_000072.6 (85431976..85446429)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 6 NC_000072.5 (85381970..85396423)

    Chromosome 6 - NC_000072.6Genomic Context describing neighboring genes Neighboring gene RIKEN cDNA 4933423K11 gene Neighboring gene notochord homeobox Neighboring gene protease-associated domain containing 1 Neighboring gene chaperonin containing Tcp1, subunit 7 (eta) Neighboring gene F-box protein 41

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)

    General gene information

    Markers

    Homology

    Clone Names

    • MGC29044

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    metal ion binding IEA
    Inferred from Electronic Annotation
    more info
     
    methyltransferase activity IEA
    Inferred from Electronic Annotation
    more info
     
    molecular_function ND
    No biological Data available
    more info
     
    transferase activity IEA
    Inferred from Electronic Annotation
    more info
     
    Process Evidence Code Pubs
    biological_process ND
    No biological Data available
    more info
     
    methylation IEA
    Inferred from Electronic Annotation
    more info
     
    Component Evidence Code Pubs
    cellular_component ND
    No biological Data available
    more info
     

    General protein information

    Preferred Names
    SET and MYND domain-containing protein 5
    Names
    retinoic acid induced 15
    retinoic acid responsive gene 1
    retinoic acid-induced protein 15

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_144918.2NP_659167.2  SET and MYND domain-containing protein 5

      See identical proteins and their annotated locations for NP_659167.2

      Status: VALIDATED

      Source sequence(s)
      AK162926, BE951851, BU847995
      Consensus CDS
      CCDS51827.1
      UniProtKB/Swiss-Prot
      Q3TYX3
      Related
      ENSMUSP00000048537.7, OTTMUSP00000019005, ENSMUST00000045693.7, OTTMUST00000042294
      Conserved Domains (1) summary
      smart00317
      Location:297350
      SET; SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm38.p4 C57BL/6J

    Genomic

    1. NC_000072.6 Reference GRCm38.p4 C57BL/6J

      Range
      85431976..85446429
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Support Center