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    Pdap1 PDGFA associated protein 1 [ Mus musculus (house mouse) ]

    Gene ID: 231887, updated on 5-Aug-2018

    Summary

    Official Symbol
    Pdap1provided by MGI
    Official Full Name
    PDGFA associated protein 1provided by MGI
    Primary source
    MGI:MGI:2448536
    See related
    Ensembl:ENSMUSG00000029623 Vega:OTTMUSG00000022988
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    PAP; PAP1; HASPP28
    Expression
    Ubiquitous expression in CNS E11.5 (RPKM 51.8), CNS E14 (RPKM 32.2) and 28 other tissues See more
    Orthologs

    Genomic context

    See Pdap1 in Genome Data Viewer
    Location:
    5; 5 G2
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    106 current GRCm38.p4 (GCF_000001635.24) 5 NC_000071.6 (145128770..145140089, complement)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 5 NC_000071.5 (145889639..145900958, complement)

    Chromosome 5 - NC_000071.6Genomic Context describing neighboring genes Neighboring gene actin related protein 2/3 complex, subunit 1A Neighboring gene actin related protein 2/3 complex, subunit 1B Neighboring gene BUD31 homolog Neighboring gene pentatricopeptide repeat domain 1 Neighboring gene cleavage and polyadenylation specific factor 4

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Targeted (1) 

    Pathways from BioSystems

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    platelet-derived growth factor binding ISO
    Inferred from Sequence Orthology
    more info
     
    Process Evidence Code Pubs
    platelet-derived growth factor receptor signaling pathway ISO
    Inferred from Sequence Orthology
    more info
     
    Component Evidence Code Pubs
    cytosol ISO
    Inferred from Sequence Orthology
    more info
     
    extracellular space ISO
    Inferred from Sequence Orthology
    more info
     
    plasma membrane ISO
    Inferred from Sequence Orthology
    more info
     

    General protein information

    Preferred Names
    28 kDa heat- and acid-stable phosphoprotein
    Names
    PDGF-associated protein

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001033313.4NP_001028485.1  28 kDa heat- and acid-stable phosphoprotein

      See identical proteins and their annotated locations for NP_001028485.1

      Status: VALIDATED

      Source sequence(s)
      AC110556
      Consensus CDS
      CCDS39384.1
      UniProtKB/Swiss-Prot
      Q3UHX2
      UniProtKB/TrEMBL
      B2RTB0
      Related
      ENSMUSP00000031627.8, OTTMUSP00000026490, ENSMUST00000031627.8
      Conserved Domains (1) summary
      pfam10252
      Location:85149
      PP28; Casein kinase substrate phosphoprotein PP28

    RNA

    1. NR_156700.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AK147170, CX202990, CX239286

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm38.p4 C57BL/6J

    Genomic

    1. NC_000071.6 Reference GRCm38.p4 C57BL/6J

      Range
      145128770..145140089 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
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