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    Sfswap splicing factor SWAP [ Mus musculus (house mouse) ]

    Gene ID: 231769, updated on 23-Jun-2021

    Summary

    Official Symbol
    Sfswapprovided by MGI
    Official Full Name
    splicing factor SWAPprovided by MGI
    Primary source
    MGI:MGI:101760
    See related
    Ensembl:ENSMUSG00000029439
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Sf; SWAP; Sfrs8; Srsf8; AI197402; AW212079; 1190005N23Rik; 6330437E22Rik
    Expression
    Ubiquitous expression in CNS E18 (RPKM 33.7), CNS E14 (RPKM 31.0) and 28 other tissues See more
    Orthologs
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    Genomic context

    See Sfswap in Genome Data Viewer
    Location:
    5; 5 G1.3
    Exon count:
    20
    Annotation release Status Assembly Chr Location
    109 current GRCm39 (GCF_000001635.27) 5 NC_000071.7 (129578286..129648448)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 5 NC_000071.6 (129501231..129571384)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 5 NC_000071.5 (130007106..130077259)

    Chromosome 5 - NC_000071.7Genomic Context describing neighboring genes Neighboring gene predicted gene, 54304 Neighboring gene predicted gene, 34468 Neighboring gene predicted gene, 40333 Neighboring gene predicted gene, 40332 Neighboring gene matrix metallopeptidase 17 Neighboring gene predicted gene 6139

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Transgenic (1) 
    • Endonuclease-mediated (1) 

    Pathways from PubChem

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables RNA binding IEA
    Inferred from Electronic Annotation
    more info
     
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
     

    General protein information

    Preferred Names
    splicing factor, suppressor of white-apricot homolog
    Names
    serine/arginine-rich splicing factor 8
    splicing factor, arginine/serine-rich 8
    suppressor of white apricot protein homolog

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001359952.1NP_001346881.1  splicing factor, suppressor of white-apricot homolog isoform 2

      Status: VALIDATED

      Source sequence(s)
      AC114614, AC114657
      Conserved Domains (1) summary
      smart00648
      Location:83136
      SWAP; Suppressor-of-White-APricot splicing regulator
    2. NM_001378915.1NP_001365844.1  splicing factor, suppressor of white-apricot homolog isoform 3

      Status: VALIDATED

      Source sequence(s)
      AC114614, AC114657
      Conserved Domains (2) summary
      smart00648
      Location:209262
      SWAP; Suppressor-of-White-APricot splicing regulator
      pfam09750
      Location:35155
      DRY_EERY; Alternative splicing regulator
    3. NM_001378916.1NP_001365845.1  splicing factor, suppressor of white-apricot homolog isoform 4

      Status: VALIDATED

      Source sequence(s)
      AC114614, AC114657
      Conserved Domains (2) summary
      smart00648
      Location:209262
      SWAP; Suppressor-of-White-APricot splicing regulator
      pfam09750
      Location:35155
      DRY_EERY; Alternative splicing regulator
    4. NM_001378917.1NP_001365846.1  splicing factor, suppressor of white-apricot homolog isoform 5

      Status: VALIDATED

      Source sequence(s)
      AC114614, AC114657
      Conserved Domains (2) summary
      smart00648
      Location:209262
      SWAP; Suppressor-of-White-APricot splicing regulator
      pfam09750
      Location:35155
      DRY_EERY; Alternative splicing regulator
    5. NM_172276.3NP_758480.2  splicing factor, suppressor of white-apricot homolog isoform 1

      See identical proteins and their annotated locations for NP_758480.2

      Status: VALIDATED

      Source sequence(s)
      AK140369, AW121884, BC057314, BY277733
      Consensus CDS
      CCDS19694.1
      UniProtKB/Swiss-Prot
      Q3USH5
      Related
      ENSMUSP00000062413.8, ENSMUST00000053737.9
      Conserved Domains (3) summary
      smart00648
      Location:209262
      SWAP; Suppressor-of-White-APricot splicing regulator
      pfam01346
      Location:634674
      FKBP_N; Domain amino terminal to FKBP-type peptidyl-prolyl isomerase
      pfam09750
      Location:35155
      DRY_EERY; Alternative splicing regulator

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000071.7 Reference GRCm39 C57BL/6J

      Range
      129578286..129648448
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_011240841.4XP_011239143.1  splicing factor, suppressor of white-apricot homolog isoform X1

      See identical proteins and their annotated locations for XP_011239143.1

      Conserved Domains (1) summary
      smart00648
      Location:83136
      SWAP; Suppressor-of-White-APricot splicing regulator
    2. XM_017320872.2XP_017176361.1  splicing factor, suppressor of white-apricot homolog isoform X4

      Conserved Domains (1) summary
      smart00648
      Location:83136
      SWAP; Suppressor-of-White-APricot splicing regulator
    3. XM_006504305.4XP_006504368.1  splicing factor, suppressor of white-apricot homolog isoform X5

      Conserved Domains (1) summary
      smart00648
      Location:83136
      SWAP; Suppressor-of-White-APricot splicing regulator
    4. XM_030254434.2XP_030110294.1  splicing factor, suppressor of white-apricot homolog isoform X6

      Conserved Domains (1) summary
      smart00648
      Location:255
      SWAP; Suppressor-of-White-APricot splicing regulator
    5. XM_030254435.2XP_030110295.1  splicing factor, suppressor of white-apricot homolog isoform X7

      Related
      ENSMUST00000199925.5
      Conserved Domains (1) summary
      smart00648
      Location:255
      SWAP; Suppressor-of-White-APricot splicing regulator
    6. XM_006504303.5XP_006504366.1  splicing factor, suppressor of white-apricot homolog isoform X1

      See identical proteins and their annotated locations for XP_006504366.1

      Conserved Domains (1) summary
      smart00648
      Location:83136
      SWAP; Suppressor-of-White-APricot splicing regulator
    7. XM_036165095.1XP_036020988.1  splicing factor, suppressor of white-apricot homolog isoform X3

      Conserved Domains (2) summary
      smart00648
      Location:209262
      SWAP; Suppressor-of-White-APricot splicing regulator
      pfam09750
      Location:35155
      DRY_EERY; Alternative splicing regulator
    8. XM_006504302.5XP_006504365.1  splicing factor, suppressor of white-apricot homolog isoform X1

      See identical proteins and their annotated locations for XP_006504365.1

      Conserved Domains (1) summary
      smart00648
      Location:83136
      SWAP; Suppressor-of-White-APricot splicing regulator
    9. XM_030254433.2XP_030110293.1  splicing factor, suppressor of white-apricot homolog isoform X2

      Conserved Domains (1) summary
      smart00648
      Location:83136
      SWAP; Suppressor-of-White-APricot splicing regulator

    RNA

    1. XR_377056.3 RNA Sequence

    Suppressed Reference Sequence(s)

    The following Reference Sequences have been suppressed. Explain

    1. NM_001035259.1: Suppressed sequence

      Description
      NM_001035259.1: This RefSeq was permanently suppressed because it was primarily intronic sequence.
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