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    Sdad1 SDA1 domain containing 1 [ Mus musculus (house mouse) ]

    Gene ID: 231452, updated on 23-Jun-2021

    Summary

    Official Symbol
    Sdad1provided by MGI
    Official Full Name
    SDA1 domain containing 1provided by MGI
    Primary source
    MGI:MGI:2140779
    See related
    Ensembl:ENSMUSG00000029415
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    AA591032; AW538460; 4931421J16
    Expression
    Ubiquitous expression in CNS E11.5 (RPKM 10.4), testis adult (RPKM 10.0) and 28 other tissues See more
    Orthologs
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    Genomic context

    See Sdad1 in Genome Data Viewer
    Location:
    5; 5 E2
    Exon count:
    22
    Annotation release Status Assembly Chr Location
    109 current GRCm39 (GCF_000001635.27) 5 NC_000071.7 (92431869..92457883, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 5 NC_000071.6 (92284010..92310024, complement)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 5 NC_000071.5 (92713036..92739050, complement)

    Chromosome 5 - NC_000071.7Genomic Context describing neighboring genes Neighboring gene protein phosphatase, EF hand calcium-binding domain 2 Neighboring gene N-acylethanolamine acid amidase Neighboring gene predicted gene, 23031 Neighboring gene chemokine (C-X-C motif) ligand 9 Neighboring gene ADP-ribosyltransferase 3 Neighboring gene chemokine (C-X-C motif) ligand 10

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
     
    Process Evidence Code Pubs
    involved_in actin cytoskeleton organization IEA
    Inferred from Electronic Annotation
    more info
     
    acts_upstream_of_or_within cellular response to leukemia inhibitory factor IEP
    Inferred from Expression Pattern
    more info
    PubMed 
    acts_upstream_of_or_within protein transport IEA
    Inferred from Electronic Annotation
    more info
     
    involved_in ribosomal large subunit biogenesis IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    involved_in ribosomal large subunit export from nucleus IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    acts_upstream_of_or_within ribosome biogenesis IEA
    Inferred from Electronic Annotation
    more info
     
    Component Evidence Code Pubs
    is_active_in nucleolus IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    located_in nucleolus ISO
    Inferred from Sequence Orthology
    more info
     
    located_in nucleoplasm ISO
    Inferred from Sequence Orthology
    more info
     
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
     

    General protein information

    Preferred Names
    protein SDA1 homolog
    Names
    SDA1 domain-containing protein 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_172713.2NP_766301.1  protein SDA1 homolog

      See identical proteins and their annotated locations for NP_766301.1

      Status: PROVISIONAL

      Source sequence(s)
      AK029881
      Consensus CDS
      CCDS19429.1
      UniProtKB/Swiss-Prot
      Q80UZ2
      UniProtKB/TrEMBL
      A0A0R4J0B7
      Related
      ENSMUSP00000031364.2, ENSMUST00000031364.5
      Conserved Domains (2) summary
      pfam05285
      Location:409684
      SDA1; SDA1
      pfam08158
      Location:62111
      NUC130_3NT; NUC130/3NT domain

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000071.7 Reference GRCm39 C57BL/6J

      Range
      92431869..92457883 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
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