Format

Send to:

Choose Destination
    • Showing Current items.

    Sdad1 SDA1 domain containing 1 [ Mus musculus (house mouse) ]

    Gene ID: 231452, updated on 23-May-2018

    Summary

    Official Symbol
    Sdad1provided by MGI
    Official Full Name
    SDA1 domain containing 1provided by MGI
    Primary source
    MGI:MGI:2140779
    See related
    Ensembl:ENSMUSG00000029415 Vega:OTTMUSG00000055601
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    AA591032; AW538460; 4931421J16
    Expression
    Ubiquitous expression in CNS E11.5 (RPKM 10.4), testis adult (RPKM 10.0) and 28 other tissues See more
    Orthologs

    Genomic context

    See Sdad1 in Genome Data Viewer
    Location:
    5; 5 E2
    Exon count:
    22
    Annotation release Status Assembly Chr Location
    106 current GRCm38.p4 (GCF_000001635.24) 5 NC_000071.6 (92284010..92310024, complement)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 5 NC_000071.5 (92713036..92739050, complement)

    Chromosome 5 - NC_000071.6Genomic Context describing neighboring genes Neighboring gene protein phosphatase, EF hand calcium-binding domain 2 Neighboring gene N-acylethanolamine acid amidase Neighboring gene chemokine (C-X-C motif) ligand 9 Neighboring gene ADP-ribosyltransferase 3 Neighboring gene chemokine (C-X-C motif) ligand 10

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    General gene information

    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    molecular_function ND
    No biological Data available
    more info
     
    Process Evidence Code Pubs
    actin cytoskeleton organization IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    cellular response to leukemia inhibitory factor IEP
    Inferred from Expression Pattern
    more info
    PubMed 
    protein transport IEA
    Inferred from Electronic Annotation
    more info
     
    ribosomal large subunit biogenesis IEA
    Inferred from Electronic Annotation
    more info
     
    ribosomal large subunit export from nucleus IEA
    Inferred from Electronic Annotation
    more info
     
    ribosome biogenesis IEA
    Inferred from Electronic Annotation
    more info
     
    Component Evidence Code Pubs
    nucleolus ISO
    Inferred from Sequence Orthology
    more info
     
    nucleus IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    nucleus ISO
    Inferred from Sequence Orthology
    more info
     

    General protein information

    Preferred Names
    protein SDA1 homolog
    Names
    SDA1 domain-containing protein 1

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_172713.2NP_766301.1  protein SDA1 homolog

      See identical proteins and their annotated locations for NP_766301.1

      Status: PROVISIONAL

      Source sequence(s)
      AK029881
      Consensus CDS
      CCDS19429.1
      UniProtKB/Swiss-Prot
      Q80UZ2
      UniProtKB/TrEMBL
      A0A0R4J0B7
      Related
      ENSMUSP00000031364.1, OTTMUSP00000072449, ENSMUST00000031364.4, OTTMUST00000137606
      Conserved Domains (2) summary
      pfam05285
      Location:409684
      SDA1; SDA1
      pfam08158
      Location:62111
      NUC130_3NT; NUC130/3NT domain

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm38.p4 C57BL/6J

    Genomic

    1. NC_000071.6 Reference GRCm38.p4 C57BL/6J

      Range
      92284010..92310024 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Support Center