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    Tapt1 transmembrane anterior posterior transformation 1 [ Mus musculus (house mouse) ]

    Gene ID: 231225, updated on 5-Aug-2018

    Summary

    Official Symbol
    Tapt1provided by MGI
    Official Full Name
    transmembrane anterior posterior transformation 1provided by MGI
    Primary source
    MGI:MGI:2683537
    See related
    Ensembl:ENSMUSG00000046985 Vega:OTTMUSG00000053809
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    4932414K18Rik
    Expression
    Ubiquitous expression in thymus adult (RPKM 24.6), mammary gland adult (RPKM 10.7) and 28 other tissues See more
    Orthologs

    Genomic context

    See Tapt1 in Genome Data Viewer
    Location:
    5; 5 B3
    Exon count:
    15
    Annotation release Status Assembly Chr Location
    106 current GRCm38.p4 (GCF_000001635.24) 5 NC_000071.6 (44175159..44228766, complement)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 5 NC_000071.5 (44566398..44617845, complement)

    Chromosome 5 - NC_000071.6Genomic Context describing neighboring genes Neighboring gene prominin 1 Neighboring gene predicted gene, 35900 Neighboring gene predicted gene, 35959 Neighboring gene predicted gene, 40296

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Transgenic (1) 
    • Targeted (1) 
    • Chemically induced (ENU) (1)  1 citation

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    molecular_function ND
    No biological Data available
    more info
     
    Process Evidence Code Pubs
    cartilage development IEA
    Inferred from Electronic Annotation
    more info
     
    cell differentiation IEA
    Inferred from Electronic Annotation
    more info
     
    cell projection organization IEA
    Inferred from Electronic Annotation
    more info
     
    embryonic skeletal system development IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    in utero embryonic development IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    maintenance of protein localization in endoplasmic reticulum IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    multicellular organism development IEA
    Inferred from Electronic Annotation
    more info
     
    ossification IEA
    Inferred from Electronic Annotation
    more info
     
    positive regulation of cilium assembly IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    positive regulation of cilium assembly ISO
    Inferred from Sequence Orthology
    more info
     
    post-embryonic development IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    Component Evidence Code Pubs
    cell projection IEA
    Inferred from Electronic Annotation
    more info
     
    centrosome ISO
    Inferred from Sequence Orthology
    more info
     
    ciliary basal body IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    ciliary basal body ISO
    Inferred from Sequence Orthology
    more info
     
    cilium IEA
    Inferred from Electronic Annotation
    more info
     
    cytoplasm IEA
    Inferred from Electronic Annotation
    more info
     
    cytoskeleton IEA
    Inferred from Electronic Annotation
    more info
     
    endoplasmic reticulum IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    integral component of endoplasmic reticulum membrane IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    integral component of membrane IEA
    Inferred from Electronic Annotation
    more info
     
    membrane IEA
    Inferred from Electronic Annotation
    more info
     

    General protein information

    Preferred Names
    transmembrane anterior posterior transformation protein 1

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_173764.3NP_776125.2  transmembrane anterior posterior transformation protein 1

      See identical proteins and their annotated locations for NP_776125.2

      Status: VALIDATED

      Source sequence(s)
      BC096038, CN459607
      Consensus CDS
      CCDS19270.1
      UniProtKB/Swiss-Prot
      Q4VBD2
      Related
      ENSMUSP00000062110.7, OTTMUSP00000071117, ENSMUST00000055128.11, OTTMUST00000133938
      Conserved Domains (1) summary
      pfam05346
      Location:152456
      DUF747; Eukaryotic membrane protein family

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm38.p4 C57BL/6J

    Genomic

    1. NC_000071.6 Reference GRCm38.p4 C57BL/6J

      Range
      44175159..44228766 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006503939.3XP_006504002.1  transmembrane anterior posterior transformation protein 1 isoform X1

      Conserved Domains (1) summary
      pfam05346
      Location:225528
      DUF747; Eukaryotic membrane protein family
    2. XM_006503940.2XP_006504003.1  transmembrane anterior posterior transformation protein 1 isoform X2

      Conserved Domains (1) summary
      pfam05346
      Location:146450
      DUF747; Eukaryotic membrane protein family
    3. XM_006503941.2XP_006504004.1  transmembrane anterior posterior transformation protein 1 isoform X3

      Conserved Domains (1) summary
      pfam05346
      Location:1285
      DUF747; Eukaryotic membrane protein family
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