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    Fam193a family with sequence similarity 193, member A [ Mus musculus (house mouse) ]

    Gene ID: 231128, updated on 5-Aug-2018

    Summary

    Official Symbol
    Fam193aprovided by MGI
    Official Full Name
    family with sequence similarity 193, member Aprovided by MGI
    Primary source
    MGI:MGI:2447768
    See related
    Ensembl:ENSMUSG00000037210 Vega:OTTMUSG00000042593
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Expression
    Ubiquitous expression in testis adult (RPKM 28.6), CNS E14 (RPKM 15.6) and 28 other tissues See more
    Orthologs

    Genomic context

    See Fam193a in Genome Data Viewer
    Location:
    5; 5 B2
    Exon count:
    21
    Annotation release Status Assembly Chr Location
    106 current GRCm38.p4 (GCF_000001635.24) 5 NC_000071.6 (34369933..34486458)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 5 NC_000071.5 (34763500..34829105)

    Chromosome 5 - NC_000071.6Genomic Context describing neighboring genes Neighboring gene cilia and flagella associated protein 99 Neighboring gene predicted gene 5553 Neighboring gene ring finger protein 4 Neighboring gene TNFAIP3 interacting protein 2 Neighboring gene SH3-domain binding protein 2

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Potential readthrough

    Included gene: Rnf4

    Homology

    Clone Names

    • MGC106708

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    molecular_function ND
    No biological Data available
    more info
     
    Process Evidence Code Pubs
    biological_process ND
    No biological Data available
    more info
     

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001243123.1NP_001230052.1  protein FAM193A

      Status: VALIDATED

      Source sequence(s)
      AC102620, BC099925, BQ176720, CN723765
      UniProtKB/Swiss-Prot
      Q8CGI1
      Related
      ENSMUSP00000138082.1, OTTMUSP00000062953, ENSMUST00000180376.7, OTTMUST00000112245
      Conserved Domains (3) summary
      pfam11679
      Location:9411021
      DUF3275; Protein of unknown function (DUF3275)
      pfam13863
      Location:11041179
      DUF4200; Domain of unknown function (DUF4200)
      pfam15914
      Location:14621515
      FAM193_C; FAM193 family C-terminal

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm38.p4 C57BL/6J

    Genomic

    1. NC_000071.6 Reference GRCm38.p4 C57BL/6J

      Range
      34369933..34486458
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Suppressed Reference Sequence(s)

    The following Reference Sequences have been suppressed. Explain

    1. NM_001030306.1: Suppressed sequence

      Description
      NM_001030306.1: This RefSeq was permanently suppressed because the CDS was partial.
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