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    Fam193a family with sequence homology 193, member A [ Mus musculus (house mouse) ]

    Gene ID: 231128, updated on 8-Feb-2024

    Summary

    Official Symbol
    Fam193aprovided by MGI
    Official Full Name
    family with sequence homology 193, member Aprovided by MGI
    Primary source
    MGI:MGI:2447768
    See related
    Ensembl:ENSMUSG00000037210 AllianceGenome:MGI:2447768
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Summary
    Orthologous to human FAM193A (family with sequence similarity 193 member A). [provided by Alliance of Genome Resources, Apr 2022]
    Expression
    Ubiquitous expression in testis adult (RPKM 28.6), CNS E14 (RPKM 15.6) and 28 other tissues See more
    Orthologs
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    Genomic context

    See Fam193a in Genome Data Viewer
    Location:
    5 B2; 5 17.88 cM
    Exon count:
    21
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 5 NC_000071.7 (34527295..34643800)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 5 NC_000071.6 (34369933..34486458)

    Chromosome 5 - NC_000071.7Genomic Context describing neighboring genes Neighboring gene cilia and flagella associated protein 99 Neighboring gene predicted gene 5553 Neighboring gene RIKEN cDNA A830049F12 gene Neighboring gene STARR-positive B cell enhancer ABC_E668 Neighboring gene ring finger protein 4 Neighboring gene STARR-positive B cell enhancer ABC_E6320 Neighboring gene predicted gene, 57744 Neighboring gene STARR-seq mESC enhancer starr_12839 Neighboring gene STARR-seq mESC enhancer starr_12841 Neighboring gene STARR-positive B cell enhancer ABC_E10314 Neighboring gene CapStarr-seq enhancer MGSCv37_chr5:34863580-34863766 Neighboring gene TNFAIP3 interacting protein 2 Neighboring gene STARR-positive B cell enhancer ABC_E10315 Neighboring gene STARR-positive B cell enhancer ABC_E6321 Neighboring gene SH3-domain binding protein 2 Neighboring gene predicted gene, 22847

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Endonuclease-mediated (3) 

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General protein information

    Preferred Names
    protein FAM193A
    Names
    family with sequence similarity 193, member A

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001243123.2NP_001230052.1  protein FAM193A

      Status: VALIDATED

      Source sequence(s)
      AC102620
      UniProtKB/TrEMBL
      M0QWZ1
      Related
      ENSMUSP00000138082.2, ENSMUST00000180376.8
      Conserved Domains (3) summary
      pfam11679
      Location:9411021
      DUF3275; Protein of unknown function (DUF3275)
      pfam13863
      Location:11041179
      DUF4200; Domain of unknown function (DUF4200)
      pfam15914
      Location:14621515
      FAM193_C; FAM193 family C-terminal

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000071.7 Reference GRCm39 C57BL/6J

      Range
      34527295..34643800
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Suppressed Reference Sequence(s)

    The following Reference Sequences have been suppressed. Explain

    1. NM_001030306.1: Suppressed sequence

      Description
      NM_001030306.1: This RefSeq was permanently suppressed because the CDS was partial.