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    9430015G10Rik RIKEN cDNA 9430015G10 gene [ Mus musculus (house mouse) ]

    Gene ID: 230996, updated on 31-Jan-2019

    Summary

    Official Symbol
    9430015G10Rikprovided by MGI
    Official Full Name
    RIKEN cDNA 9430015G10 geneprovided by MGI
    Primary source
    MGI:MGI:2444364
    See related
    Ensembl:ENSMUSG00000059939
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Expression
    Ubiquitous expression in testis adult (RPKM 29.5), limb E14.5 (RPKM 19.8) and 28 other tissues See more
    Orthologs

    Genomic context

    See 9430015G10Rik in Genome Data Viewer
    Location:
    4; 4 E2
    Exon count:
    11
    Annotation release Status Assembly Chr Location
    106 current GRCm38.p4 (GCF_000001635.24) 4 NC_000070.6 (156109998..156127265)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 4 NC_000070.5 (155484107..155501372)

    Chromosome 4 - NC_000070.6Genomic Context describing neighboring genes Neighboring gene tubulin tyrosine ligase-like family, member 10 Neighboring gene predicted gene 13648 Neighboring gene microRNA 200a Neighboring gene microRNA 200b Neighboring gene ring finger 223 Neighboring gene agrin Neighboring gene predicted gene, 46878

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)

    General gene information

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    molecular_function ND
    No biological Data available
    more info
     
    Process Evidence Code Pubs
    biological_process ND
    No biological Data available
    more info
     
    Component Evidence Code Pubs
    cellular_component ND
    No biological Data available
    more info
     

    General protein information

    Preferred Names
    uncharacterized protein C1orf159 homolog

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_145557.3NP_663532.2  uncharacterized protein C1orf159 homolog precursor

      See identical proteins and their annotated locations for NP_663532.2

      Status: VALIDATED

      Description
      Transcript Variant: This variant (2) differs in the 5' UTR compared to variant (1). Both variants encode the same protein.
      Source sequence(s)
      AL928667, BQ830972, CA945382, CO803636
      Consensus CDS
      CCDS19059.1
      UniProtKB/TrEMBL
      A2ASP7
      Related
      ENSMUSP00000072366.6, ENSMUST00000072554.12
      Conserved Domains (1) summary
      pfam14946
      Location:23199
      DUF4501; Domain of unknown function (DUF4501)
    2. NM_177205.1NP_796179.1  uncharacterized protein C1orf159 homolog precursor

      See identical proteins and their annotated locations for NP_796179.1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (1) represents the longer transcript. Both variants encode the same protein.
      Source sequence(s)
      AL928667, BY727027, CA945382, CO803636
      Consensus CDS
      CCDS19059.1
      UniProtKB/TrEMBL
      A2ASP7
      Related
      ENSMUSP00000131817.1, ENSMUST00000169550.7
      Conserved Domains (1) summary
      pfam14946
      Location:23199
      DUF4501; Domain of unknown function (DUF4501)

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm38.p4 C57BL/6J

    Genomic

    1. NC_000070.6 Reference GRCm38.p4 C57BL/6J

      Range
      156109998..156127265
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006538834.3XP_006538897.1  uncharacterized protein C1orf159 homolog isoform X1

      See identical proteins and their annotated locations for XP_006538897.1

      UniProtKB/TrEMBL
      A2ASP7
      Conserved Domains (1) summary
      pfam14946
      Location:23199
      DUF4501; Domain of unknown function (DUF4501)
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