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    Dnajc11 DnaJ heat shock protein family (Hsp40) member C11 [ Mus musculus (house mouse) ]

    Gene ID: 230935, updated on 9-Sep-2018

    Summary

    Official Symbol
    Dnajc11provided by MGI
    Official Full Name
    DnaJ heat shock protein family (Hsp40) member C11provided by MGI
    Primary source
    MGI:MGI:2443386
    See related
    Ensembl:ENSMUSG00000039768 Vega:OTTMUSG00000010358
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    E030019A03Rik
    Expression
    Ubiquitous expression in adrenal adult (RPKM 12.4), placenta adult (RPKM 11.5) and 28 other tissues See more
    Orthologs

    Genomic context

    See Dnajc11 in Genome Data Viewer
    Location:
    4; 4 E2
    Exon count:
    16
    Annotation release Status Assembly Chr Location
    106 current GRCm38.p4 (GCF_000001635.24) 4 NC_000070.6 (151933714..151981959)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 4 NC_000070.5 (151307829..151356068)

    Chromosome 4 - NC_000070.6Genomic Context describing neighboring genes Neighboring gene calmodulin binding transcription activator 1 Neighboring gene predicted gene, 38442 Neighboring gene RIKEN cDNA 9230110K08 gene Neighboring gene predicted gene, 42357 Neighboring gene THAP domain containing, apoptosis associated protein 3 Neighboring gene PHD finger protein 13

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

    GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)

    General gene information

    Markers

    Homology

    Gene Ontology Provided by MGI

    Process Evidence Code Pubs
    cristae formation IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    cristae formation IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    cristae formation ISO
    Inferred from Sequence Orthology
    more info
     
    Component Evidence Code Pubs
    colocalizes_with MICOS complex IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    colocalizes_with MICOS complex ISO
    Inferred from Sequence Orthology
    more info
     
    membrane IEA
    Inferred from Electronic Annotation
    more info
     
    mitochondrial inner membrane HDA PubMed 
    mitochondrial outer membrane ISO
    Inferred from Sequence Orthology
    more info
     
    colocalizes_with mitochondrial sorting and assembly machinery complex ISO
    Inferred from Sequence Orthology
    more info
     
    mitochondrion HDA PubMed 
    mitochondrion IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    mitochondrion ISO
    Inferred from Sequence Orthology
    more info
     

    General protein information

    Preferred Names
    dnaJ homolog subfamily C member 11
    Names
    DnaJ (Hsp40) homolog, subfamily C, member 11

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_172704.3NP_766292.2  dnaJ homolog subfamily C member 11

      See identical proteins and their annotated locations for NP_766292.2

      Status: VALIDATED

      Source sequence(s)
      AK053156, BY784439, DV663024
      Consensus CDS
      CCDS18981.2
      UniProtKB/Swiss-Prot
      Q5U458
      Related
      ENSMUSP00000051643.4, OTTMUSP00000011095, ENSMUST00000062904.10, OTTMUST00000024140
      Conserved Domains (3) summary
      pfam00226
      Location:1479
      DnaJ; DnaJ domain
      pfam06936
      Location:372447
      Selenoprotein_S; Selenoprotein S (SelS)
      pfam11875
      Location:417549
      DUF3395; Domain of unknown function (DUF3395)

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm38.p4 C57BL/6J

    Genomic

    1. NC_000070.6 Reference GRCm38.p4 C57BL/6J

      Range
      151933714..151981959
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_017320184.1XP_017175673.1  dnaJ homolog subfamily C member 11 isoform X1

    2. XM_017320185.1XP_017175674.1  dnaJ homolog subfamily C member 11 isoform X2

    RNA

    1. XR_001784136.1 RNA Sequence

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