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    Wdtc1 WD and tetratricopeptide repeats 1 [ Mus musculus (house mouse) ]

    Gene ID: 230796, updated on 31-Jan-2019

    Summary

    Official Symbol
    Wdtc1provided by MGI
    Official Full Name
    WD and tetratricopeptide repeats 1provided by MGI
    Primary source
    MGI:MGI:2685541
    See related
    Ensembl:ENSMUSG00000037622
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    adp; Gm695; adipose
    Expression
    Broad expression in testis adult (RPKM 115.3), duodenum adult (RPKM 49.0) and 24 other tissues See more
    Orthologs

    Genomic context

    See Wdtc1 in Genome Data Viewer
    Location:
    4; 4 D2.3
    Exon count:
    19
    Annotation release Status Assembly Chr Location
    106 current GRCm38.p4 (GCF_000001635.24) 4 NC_000070.6 (133292466..133353467, complement)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 4 NC_000070.5 (132848381..132895230, complement)

    Chromosome 4 - NC_000070.6Genomic Context describing neighboring genes Neighboring gene synaptotagmin-like 1 Neighboring gene transmembrane protein 222 Neighboring gene microRNA 5122 Neighboring gene solute carrier family 9 (sodium/hydrogen exchanger), member 1 Neighboring gene RIKEN cDNA 1700091J24 gene

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

    GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enzyme inhibitor activity IDA
    Inferred from Direct Assay
    more info
    PubMed 
    histone binding IPI
    Inferred from Physical Interaction
    more info
    PubMed 
    histone deacetylase binding IPI
    Inferred from Physical Interaction
    more info
    PubMed 
    Component Evidence Code Pubs
    cell IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    cytosol IDA
    Inferred from Direct Assay
    more info
    PubMed 
    nucleus IDA
    Inferred from Direct Assay
    more info
    PubMed 

    General protein information

    Preferred Names
    WD and tetratricopeptide repeats protein 1

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_199306.4NP_955010.1  WD and tetratricopeptide repeats protein 1

      See identical proteins and their annotated locations for NP_955010.1

      Status: VALIDATED

      Source sequence(s)
      AL671882
      Consensus CDS
      CCDS18746.1
      UniProtKB/Swiss-Prot
      Q80ZK9
      Related
      ENSMUSP00000040647.7, ENSMUST00000043305.13
      Conserved Domains (4) summary
      sd00006
      Location:365389
      TPR; TPR repeat [structural motif]
      sd00039
      Location:5188
      7WD40; WD40 repeat [structural motif]
      cl25539
      Location:34163
      WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
      cl26005
      Location:367437
      PLN03088; SGT1, suppressor of G2 allele of SKP1; Provisional

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm38.p4 C57BL/6J

    Genomic

    1. NC_000070.6 Reference GRCm38.p4 C57BL/6J

      Range
      133292466..133353467 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006538744.3XP_006538807.1  WD and tetratricopeptide repeats protein 1 isoform X1

      See identical proteins and their annotated locations for XP_006538807.1

      UniProtKB/Swiss-Prot
      Q80ZK9
      Conserved Domains (4) summary
      sd00006
      Location:365389
      TPR; TPR repeat [structural motif]
      sd00039
      Location:5188
      7WD40; WD40 repeat [structural motif]
      cl25539
      Location:34163
      WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
      cl26005
      Location:367437
      PLN03088; SGT1, suppressor of G2 allele of SKP1; Provisional
    2. XM_006538743.3XP_006538806.1  WD and tetratricopeptide repeats protein 1 isoform X1

      See identical proteins and their annotated locations for XP_006538806.1

      UniProtKB/Swiss-Prot
      Q80ZK9
      Conserved Domains (4) summary
      sd00006
      Location:365389
      TPR; TPR repeat [structural motif]
      sd00039
      Location:5188
      7WD40; WD40 repeat [structural motif]
      cl25539
      Location:34163
      WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
      cl26005
      Location:367437
      PLN03088; SGT1, suppressor of G2 allele of SKP1; Provisional
    3. XM_006538746.1XP_006538809.1  WD and tetratricopeptide repeats protein 1 isoform X3

      Conserved Domains (7) summary
      COG2319
      Location:3246
      WD40; WD40 repeat [General function prediction only]
      sd00006
      Location:281305
      TPR; TPR repeat [structural motif]
      pfam00515
      Location:311345
      TPR_1; Tetratricopeptide repeat
      pfam13414
      Location:281345
      TPR_11; TPR repeat
      pfam13432
      Location:317382
      TPR_16; Tetratricopeptide repeat
      sd00039
      Location:453493
      7WD40; WD40 repeat [structural motif]
      cl02567
      Location:3132
      WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
    4. XM_006538745.1XP_006538808.1  WD and tetratricopeptide repeats protein 1 isoform X2

      Conserved Domains (4) summary
      sd00006
      Location:364388
      TPR; TPR repeat [structural motif]
      sd00039
      Location:5188
      7WD40; WD40 repeat [structural motif]
      cl25539
      Location:34163
      WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
      cl26005
      Location:366436
      PLN03088; SGT1, suppressor of G2 allele of SKP1; Provisional
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