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    Ahdc1 AT hook, DNA binding motif, containing 1 [ Mus musculus (house mouse) ]

    Gene ID: 230793, updated on 23-Jun-2021

    Summary

    Official Symbol
    Ahdc1provided by MGI
    Official Full Name
    AT hook, DNA binding motif, containing 1provided by MGI
    Primary source
    MGI:MGI:2444218
    See related
    Ensembl:ENSMUSG00000037692
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    D030015G18Rik
    Expression
    Ubiquitous expression in adrenal adult (RPKM 19.5), ovary adult (RPKM 13.3) and 25 other tissues See more
    Orthologs
    NEW
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    Try the new Transcript table

    Genomic context

    See Ahdc1 in Genome Data Viewer
    Location:
    4; 4 D2.3
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    109 current GRCm39 (GCF_000001635.27) 4 NC_000070.7 (132738576..132805421)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 4 NC_000070.6 (133011265..133078110)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 4 NC_000070.5 (132567421..132634025)

    Chromosome 4 - NC_000070.7Genomic Context describing neighboring genes Neighboring gene FGR proto-oncogene, Src family tyrosine kinase Neighboring gene predicted gene, 36599 Neighboring gene nuclear encoded tRNA glycine 1 (anticodon GCC) Neighboring gene WASP family, member 2 Neighboring gene microRNA 7017

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Homology

    Clone Names

    • MGC29331

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
     
    enables molecular_function ND
    No biological Data available
    more info
     
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
     
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
     

    General protein information

    Preferred Names
    AT-hook DNA-binding motif-containing protein 1
    Names
    a.T hook DNA-binding motif-containing protein 1

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_146155.3NP_666267.3  AT-hook DNA-binding motif-containing protein 1

      See identical proteins and their annotated locations for NP_666267.3

      Status: VALIDATED

      Source sequence(s)
      AK149347, AL627184, BC060231
      Consensus CDS
      CCDS38900.1
      UniProtKB/Swiss-Prot
      Q6PAL7
      Related
      ENSMUSP00000101536.2, ENSMUST00000105916.8
      Conserved Domains (2) summary
      PHA03247
      Location:8571069
      PHA03247; large tegument protein UL36; Provisional
      pfam15735
      Location:591639
      DUF4683; Domain of unknown function (DUF4683)

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000070.7 Reference GRCm39 C57BL/6J

      Range
      132738576..132805421
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006538737.2XP_006538800.1  AT-hook DNA-binding motif-containing protein 1 isoform X1

      See identical proteins and their annotated locations for XP_006538800.1

      UniProtKB/Swiss-Prot
      Q6PAL7
      Conserved Domains (2) summary
      PHA03247
      Location:8571069
      PHA03247; large tegument protein UL36; Provisional
      pfam15735
      Location:591639
      DUF4683; Domain of unknown function (DUF4683)
    2. XM_006538740.3XP_006538803.1  AT-hook DNA-binding motif-containing protein 1 isoform X1

      See identical proteins and their annotated locations for XP_006538803.1

      UniProtKB/Swiss-Prot
      Q6PAL7
      Related
      ENSMUSP00000101535.2, ENSMUST00000105915.8
      Conserved Domains (2) summary
      PHA03247
      Location:8571069
      PHA03247; large tegument protein UL36; Provisional
      pfam15735
      Location:591639
      DUF4683; Domain of unknown function (DUF4683)
    3. XM_030253465.2XP_030109325.1  AT-hook DNA-binding motif-containing protein 1 isoform X1

      Conserved Domains (2) summary
      PHA03247
      Location:8571069
      PHA03247; large tegument protein UL36; Provisional
      pfam15735
      Location:591639
      DUF4683; Domain of unknown function (DUF4683)
    4. XM_006538738.5XP_006538801.1  AT-hook DNA-binding motif-containing protein 1 isoform X1

      See identical proteins and their annotated locations for XP_006538801.1

      UniProtKB/Swiss-Prot
      Q6PAL7
      Conserved Domains (2) summary
      PHA03247
      Location:8571069
      PHA03247; large tegument protein UL36; Provisional
      pfam15735
      Location:591639
      DUF4683; Domain of unknown function (DUF4683)
    5. XM_011250231.2XP_011248533.1  AT-hook DNA-binding motif-containing protein 1 isoform X1

      See identical proteins and their annotated locations for XP_011248533.1

      UniProtKB/Swiss-Prot
      Q6PAL7
      Conserved Domains (2) summary
      PHA03247
      Location:8571069
      PHA03247; large tegument protein UL36; Provisional
      pfam15735
      Location:591639
      DUF4683; Domain of unknown function (DUF4683)
    6. XM_006538739.2XP_006538802.1  AT-hook DNA-binding motif-containing protein 1 isoform X1

      See identical proteins and their annotated locations for XP_006538802.1

      UniProtKB/Swiss-Prot
      Q6PAL7
      Conserved Domains (2) summary
      PHA03247
      Location:8571069
      PHA03247; large tegument protein UL36; Provisional
      pfam15735
      Location:591639
      DUF4683; Domain of unknown function (DUF4683)
    7. XM_006538734.2XP_006538797.1  AT-hook DNA-binding motif-containing protein 1 isoform X1

      See identical proteins and their annotated locations for XP_006538797.1

      UniProtKB/Swiss-Prot
      Q6PAL7
      Conserved Domains (2) summary
      PHA03247
      Location:8571069
      PHA03247; large tegument protein UL36; Provisional
      pfam15735
      Location:591639
      DUF4683; Domain of unknown function (DUF4683)
    8. XM_006538742.2XP_006538805.1  AT-hook DNA-binding motif-containing protein 1 isoform X1

      See identical proteins and their annotated locations for XP_006538805.1

      UniProtKB/Swiss-Prot
      Q6PAL7
      Conserved Domains (2) summary
      PHA03247
      Location:8571069
      PHA03247; large tegument protein UL36; Provisional
      pfam15735
      Location:591639
      DUF4683; Domain of unknown function (DUF4683)
    9. XM_030253464.2XP_030109324.1  AT-hook DNA-binding motif-containing protein 1 isoform X1

      Conserved Domains (2) summary
      PHA03247
      Location:8571069
      PHA03247; large tegument protein UL36; Provisional
      pfam15735
      Location:591639
      DUF4683; Domain of unknown function (DUF4683)
    10. XM_006538736.4XP_006538799.1  AT-hook DNA-binding motif-containing protein 1 isoform X1

      See identical proteins and their annotated locations for XP_006538799.1

      UniProtKB/Swiss-Prot
      Q6PAL7
      Conserved Domains (2) summary
      PHA03247
      Location:8571069
      PHA03247; large tegument protein UL36; Provisional
      pfam15735
      Location:591639
      DUF4683; Domain of unknown function (DUF4683)
    11. XM_036164065.1XP_036019958.1  AT-hook DNA-binding motif-containing protein 1 isoform X1

      Related
      ENSMUSP00000101534.2, ENSMUST00000105914.2
      Conserved Domains (2) summary
      PHA03247
      Location:8571069
      PHA03247; large tegument protein UL36; Provisional
      pfam15735
      Location:591639
      DUF4683; Domain of unknown function (DUF4683)
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