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    Yrdc yrdC domain containing (E.coli) [ Mus musculus (house mouse) ]

    Gene ID: 230734, updated on 23-Jun-2021

    Summary

    Official Symbol
    Yrdcprovided by MGI
    Official Full Name
    yrdC domain containing (E.coli)provided by MGI
    Primary source
    MGI:MGI:2387201
    See related
    Ensembl:ENSMUSG00000028889
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    IRIP; ITIP; AV303379; BC023823
    Expression
    Ubiquitous expression in adrenal adult (RPKM 33.7), ovary adult (RPKM 30.6) and 28 other tissues See more
    Orthologs
    NEW
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    Genomic context

    See Yrdc in Genome Data Viewer
    Location:
    4; 4 D2.2
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    109 current GRCm39 (GCF_000001635.27) 4 NC_000070.7 (124744552..124749035)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 4 NC_000070.6 (124850759..124855242)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 4 NC_000070.5 (124528003..124532486)

    Chromosome 4 - NC_000070.7Genomic Context describing neighboring genes Neighboring gene metal response element binding transcription factor 1 Neighboring gene RIKEN cDNA 1110065P20 gene Neighboring gene predicted gene, 54256 Neighboring gene mannosidase, endo-alpha-like Neighboring gene RIKEN cDNA 1700125G02 gene Neighboring gene Eph receptor A10 Neighboring gene cell division cycle associated 8

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Homology

    Clone Names

    • MGC38336

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables double-stranded RNA binding IEA
    Inferred from Electronic Annotation
    more info
     
    enables nucleotidyltransferase activity IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    PubMed 
    enables tRNA binding IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    Process Evidence Code Pubs
    acts_upstream_of_or_within negative regulation of transport ISO
    Inferred from Sequence Orthology
    more info
    PubMed 
    involved_in regulation of translational fidelity IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    Component Evidence Code Pubs
    is_active_in cytoplasm IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    located_in membrane IDA
    Inferred from Direct Assay
    more info
    PubMed 
    located_in mitochondrion IEA
    Inferred from Electronic Annotation
    more info
     

    General protein information

    Preferred Names
    yrdC domain-containing protein, mitochondrial
    Names
    Ischemia/reperfusion-inducible protein
    mIRIP

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_153566.2NP_705794.2  yrdC domain-containing protein, mitochondrial precursor

      See identical proteins and their annotated locations for NP_705794.2

      Status: VALIDATED

      Source sequence(s)
      AI413772, AK153627
      Consensus CDS
      CCDS18628.2
      UniProtKB/Swiss-Prot
      Q3U5F4
      Related
      ENSMUSP00000099688.5, ENSMUST00000102628.11
      Conserved Domains (1) summary
      COG0009
      Location:70257
      SUA5; tRNA A37 threonylcarbamoyladenosine synthetase subunit TsaC/SUA5/YrdC [Translation, ribosomal structure and biogenesis]

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000070.7 Reference GRCm39 C57BL/6J

      Range
      124744552..124749035
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
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