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    Ipo13 importin 13 [ Mus musculus (house mouse) ]

    Gene ID: 230673, updated on 23-Jun-2021

    Summary

    Official Symbol
    Ipo13provided by MGI
    Official Full Name
    importin 13provided by MGI
    Primary source
    MGI:MGI:2385205
    See related
    Ensembl:ENSMUSG00000033365
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Imp; Kap; Imp13; Kap13; Ranbp13
    Expression
    Ubiquitous expression in testis adult (RPKM 70.7), ovary adult (RPKM 30.8) and 28 other tissues See more
    Orthologs
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    Genomic context

    See Ipo13 in Genome Data Viewer
    Location:
    4; 4 D1
    Exon count:
    21
    Annotation release Status Assembly Chr Location
    109 current GRCm39 (GCF_000001635.27) 4 NC_000070.7 (117751683..117772419, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 4 NC_000070.6 (117893268..117915222, complement)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 4 NC_000070.5 (117567098..117587604, complement)

    Chromosome 4 - NC_000070.7Genomic Context describing neighboring genes Neighboring gene predicted gene 12841 Neighboring gene ATPase, H+ transporting, lysosomal V0 subunit B Neighboring gene DPH2 homolog Neighboring gene ST3 beta-galactoside alpha-2,3-sialyltransferase 3 Neighboring gene artemin Neighboring gene RIKEN cDNA 9530034E10 gene

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Gene trapped (1) 

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Homology

    Clone Names

    • MGC18698

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables glucocorticoid receptor binding ISO
    Inferred from Sequence Orthology
    more info
     
    enables small GTPase binding IEA
    Inferred from Electronic Annotation
    more info
     
    Process Evidence Code Pubs
    involved_in intracellular protein transport IEA
    Inferred from Electronic Annotation
    more info
     
    involved_in protein import into nucleus IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    acts_upstream_of_or_within protein import into nucleus ISO
    Inferred from Sequence Orthology
    more info
    PubMed 
    involved_in protein import into nucleus ISO
    Inferred from Sequence Orthology
    more info
     
    acts_upstream_of_or_within protein transport IEA
    Inferred from Electronic Annotation
    more info
     
    Component Evidence Code Pubs
    is_active_in cytoplasm IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    located_in cytoplasm ISO
    Inferred from Sequence Orthology
    more info
     
    located_in nucleus ISO
    Inferred from Sequence Orthology
    more info
     

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_146152.3NP_666264.1  importin-13

      See identical proteins and their annotated locations for NP_666264.1

      Status: PROVISIONAL

      Source sequence(s)
      AK052257
      Consensus CDS
      CCDS18542.1
      UniProtKB/Swiss-Prot
      Q8K0C1
      Related
      ENSMUSP00000035989.6, ENSMUST00000036156.6
      Conserved Domains (3) summary
      smart00913
      Location:45109
      IBN_N; Importin-beta N-terminal domain
      COG5101
      Location:20650
      CRM1; Importin beta-related nuclear transport receptor [Nuclear structure / Intracellular trafficking and secretion]
      pfam08389
      Location:116263
      Xpo1; Exportin 1-like protein

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000070.7 Reference GRCm39 C57BL/6J

      Range
      117751683..117772419 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_017320147.3XP_017175636.1  importin-13 isoform X1

      Conserved Domains (5) summary
      smart00913
      Location:45109
      IBN_N; Importin-beta N-terminal domain
      COG5101
      Location:20650
      CRM1; Importin beta-related nuclear transport receptor [Nuclear structure / Intracellular trafficking and secretion]
      pfam08389
      Location:116263
      Xpo1; Exportin 1-like protein
      pfam18773
      Location:402441
      Importin_rep; Importin 13 repeat
      pfam18786
      Location:631672
      Importin_rep_2; Importin 13 repeat

    RNA

    1. XR_376308.5 RNA Sequence

    2. XR_003954914.2 RNA Sequence

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