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    Yipf1 Yip1 domain family, member 1 [ Mus musculus (house mouse) ]

    Gene ID: 230584, updated on 23-Jun-2021

    Summary

    Official Symbol
    Yipf1provided by MGI
    Official Full Name
    Yip1 domain family, member 1provided by MGI
    Primary source
    MGI:MGI:1915532
    See related
    Ensembl:ENSMUSG00000057375
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    C030002N13Rik
    Expression
    Ubiquitous expression in large intestine adult (RPKM 32.5), colon adult (RPKM 31.0) and 28 other tissues See more
    Orthologs
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    Genomic context

    See Yipf1 in Genome Data Viewer
    Location:
    4; 4 C7
    Exon count:
    12
    Annotation release Status Assembly Chr Location
    109 current GRCm39 (GCF_000001635.27) 4 NC_000070.7 (107149068..107217020)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 4 NC_000070.6 (107314223..107359823)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 4 NC_000070.5 (106987036..107032427)

    Chromosome 4 - NC_000070.7Genomic Context describing neighboring genes Neighboring gene leucine rich repeat containing 42 Neighboring gene heat shock protein family B (small), member 11 Neighboring gene deiodinase, iodothyronine, type I Neighboring gene replication factor C (activator 1) 5 pseudogene Neighboring gene NDC1 transmembrane nucleoporin Neighboring gene GLIS family zinc finger 1 Neighboring gene RIKEN cDNA 4930552P06 gene

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Targeted (1) 

    General gene information

    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables small GTPase binding IEA
    Inferred from Electronic Annotation
    more info
     
    Process Evidence Code Pubs
    involved_in vesicle-mediated transport IEA
    Inferred from Electronic Annotation
    more info
     
    Component Evidence Code Pubs
    is_active_in Golgi apparatus IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    located_in Golgi apparatus ISO
    Inferred from Sequence Orthology
    more info
     
    located_in Golgi medial cisterna ISO
    Inferred from Sequence Orthology
    more info
     
    located_in Golgi trans cisterna ISO
    Inferred from Sequence Orthology
    more info
     
    located_in endosome IEA
    Inferred from Electronic Annotation
    more info
     
    located_in integral component of membrane IEA
    Inferred from Electronic Annotation
    more info
     
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
     
    located_in nucleoplasm ISO
    Inferred from Sequence Orthology
    more info
     
    located_in plasma membrane ISO
    Inferred from Sequence Orthology
    more info
     
    located_in trans-Golgi network ISO
    Inferred from Sequence Orthology
    more info
     
    located_in transport vesicle ISO
    Inferred from Sequence Orthology
    more info
     

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001205156.1NP_001192085.1  protein YIPF1 isoform 2

      See identical proteins and their annotated locations for NP_001192085.1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (2) lacks an exon in the coding region, but maintains the reading frame, compared to variant 1. The encoded isoform (2) is shorter than isoform 1.
      Source sequence(s)
      AL626784, AL645723
      Related
      ENSMUSP00000115626.2, ENSMUST00000139527.8
      Conserved Domains (1) summary
      pfam04893
      Location:65241
      Yip1; Yip1 domain
    2. NM_145550.3NP_663525.1  protein YIPF1 isoform 1

      See identical proteins and their annotated locations for NP_663525.1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (1) represents the longer transcript and encodes the longer isoform (1).
      Source sequence(s)
      AI303400, AK081205, BY204210
      Consensus CDS
      CCDS18437.1
      UniProtKB/Swiss-Prot
      Q91VU1
      Related
      ENSMUSP00000075113.6, ENSMUST00000075693.12
      Conserved Domains (1) summary
      pfam04893
      Location:100277
      Yip1; Yip1 domain

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000070.7 Reference GRCm39 C57BL/6J

      Range
      107149068..107217020
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_036164021.1XP_036019914.1  protein YIPF1 isoform X1

      Conserved Domains (1) summary
      pfam04893
      Location:100277
      Yip1; Yip1 domain
    2. XM_006502968.5XP_006503031.1  protein YIPF1 isoform X2

      Related
      ENSMUSP00000114898.2, ENSMUST00000128284.8
      Conserved Domains (1) summary
      pfam04893
      Location:86268
      Yip1; Yip1 domain
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