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    Leprot leptin receptor overlapping transcript [ Mus musculus (house mouse) ]

    Gene ID: 230514, updated on 23-Jun-2021

    Summary

    Official Symbol
    Leprotprovided by MGI
    Official Full Name
    leptin receptor overlapping transcriptprovided by MGI
    Primary source
    MGI:MGI:2687005
    See related
    Ensembl:ENSMUSG00000035212
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Ob; OB-; LEPR; VPS55; Obrgrp; OB-RGRP
    Expression
    Ubiquitous expression in bladder adult (RPKM 58.2), lung adult (RPKM 39.9) and 28 other tissues See more
    Orthologs
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    Genomic context

    See Leprot in Genome Data Viewer
    Location:
    4; 4 C6
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    109 current GRCm39 (GCF_000001635.27) 4 NC_000070.7 (101504980..101516561)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 4 NC_000070.6 (101647783..101659364)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 4 NC_000070.5 (101320388..101331963)

    Chromosome 4 - NC_000070.7Genomic Context describing neighboring genes Neighboring gene adenylate kinase 4 Neighboring gene DnaJ heat shock protein family (Hsp40) member C6 Neighboring gene predicted gene, 36012 Neighboring gene leptin receptor Neighboring gene PRAME like 17

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Targeted (2) 

    General gene information

    Homology

    Clone Names

    • MGC6694

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    PubMed 
    enables signaling receptor binding ISO
    Inferred from Sequence Orthology
    more info
     
    Component Evidence Code Pubs
    located_in Golgi apparatus ISO
    Inferred from Sequence Orthology
    more info
     
    is_active_in endosome IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    located_in endosome ISO
    Inferred from Sequence Orthology
    more info
     
    located_in integral component of membrane IEA
    Inferred from Electronic Annotation
    more info
     
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
     

    General protein information

    Preferred Names
    leptin receptor gene-related protein
    Names
    OB-R gene-related protein
    endospanin-1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_175036.4NP_778201.1  leptin receptor gene-related protein

      See identical proteins and their annotated locations for NP_778201.1

      Status: PROVISIONAL

      Source sequence(s)
      AL929373, BX323551
      Consensus CDS
      CCDS18396.1
      UniProtKB/Swiss-Prot
      O89013
      Related
      ENSMUSP00000030254.9, ENSMUST00000030254.15
      Conserved Domains (1) summary
      pfam04133
      Location:7124
      Vps55; Vacuolar protein sorting 55

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000070.7 Reference GRCm39 C57BL/6J

      Range
      101504980..101516561
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_030253422.2XP_030109282.1  leptin receptor gene-related protein isoform X1

      Conserved Domains (1) summary
      pfam04133
      Location:1103
      Vps55; Vacuolar protein sorting 55
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