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    Efcab7 EF-hand calcium binding domain 7 [ Mus musculus (house mouse) ]

    Gene ID: 230500, updated on 27-Jan-2018

    Summary

    Official Symbol
    Efcab7provided by MGI
    Official Full Name
    EF-hand calcium binding domain 7provided by MGI
    Primary source
    MGI:MGI:2385199
    See related
    Ensembl:ENSMUSG00000073791
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    mKIAA1799
    Annotation information
    Annotation category: suggests misassembly
    Annotation category: partial on reference assembly
    Expression
    Broad expression in CNS E11.5 (RPKM 2.9), testis adult (RPKM 2.1) and 17 other tissues See more
    Orthologs

    Genomic context

    See Efcab7 in Genome Data Viewer
    Location:
    4; 4 C6
    Exon count:
    13
    Annotation release Status Assembly Chr Location
    106 current GRCm38.p4 (GCF_000001635.24) 4 NC_000070.6 (99829500..99912785)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 4 NC_000070.5 (99550648..99585390)

    Chromosome 4 - NC_000070.6Genomic Context describing neighboring genes Neighboring gene asparagine-linked glycosylation 6 (alpha-1,3,-glucosyltransferase) Neighboring gene integrin beta 3 binding protein (beta3-endonexin) Neighboring gene cDNA sequence BC062258 Neighboring gene phosphoglucomutase 2 Neighboring gene predicted gene, 35701

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Endonuclease-mediated (1) 

    General gene information

    Homology

    Clone Names

    • MGC28352, MGC118010

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    calcium ion binding IEA
    Inferred from Electronic Annotation
    more info
     
    metal ion binding IEA
    Inferred from Electronic Annotation
    more info
     
    protein binding IPI
    Inferred from Physical Interaction
    more info
    PubMed 
    Component Evidence Code Pubs
    cell projection IEA
    Inferred from Electronic Annotation
    more info
     
    ciliary membrane IDA
    Inferred from Direct Assay
    more info
    PubMed 
    extrinsic component of membrane IDA
    Inferred from Direct Assay
    more info
    PubMed 
    membrane IEA
    Inferred from Electronic Annotation
    more info
     
    plasma membrane IEA
    Inferred from Electronic Annotation
    more info
     
    plasma membrane protein complex IDA
    Inferred from Direct Assay
    more info
    PubMed 

    General protein information

    Preferred Names
    EF-hand calcium-binding domain-containing protein 7

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_145549.1NP_663524.1  EF-hand calcium-binding domain-containing protein 7

      See identical proteins and their annotated locations for NP_663524.1

      Status: PROVISIONAL

      Source sequence(s)
      BC020077
      UniProtKB/Swiss-Prot
      Q8VDY4
      Related
      ENSMUSP00000095572.4, ENSMUST00000097959.10
      Conserved Domains (3) summary
      PTZ00183
      Location:21171
      PTZ00183; centrin; Provisional
      cd00051
      Location:106166
      EFh; EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to ...
      cl08302
      Location:407467
      EFh; EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to ...

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm38.p4 C57BL/6J

    Genomic

    1. NC_000070.6 Reference GRCm38.p4 C57BL/6J

      Range
      99829500..99912785
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
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