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    Nol6 nucleolar protein family 6 (RNA-associated) [ Mus musculus (house mouse) ]

    Gene ID: 230082, updated on 5-Aug-2018

    Summary

    Official Symbol
    Nol6provided by MGI
    Official Full Name
    nucleolar protein family 6 (RNA-associated)provided by MGI
    Primary source
    MGI:MGI:2140151
    See related
    Ensembl:ENSMUSG00000028430 Vega:OTTMUSG00000006643
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Nrap; AA410091
    Expression
    Ubiquitous expression in adrenal adult (RPKM 36.7), ovary adult (RPKM 27.9) and 28 other tissues See more
    Orthologs

    Genomic context

    See Nol6 in Genome Data Viewer
    Location:
    4; 4 A5
    Exon count:
    26
    Annotation release Status Assembly Chr Location
    106 current GRCm38.p4 (GCF_000001635.24) 4 NC_000070.6 (41114427..41124339, complement)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 4 NC_000070.5 (41061460..41071372, complement)

    Chromosome 4 - NC_000070.6Genomic Context describing neighboring genes Neighboring gene aquaporin 7 Neighboring gene aquaporin 3 Neighboring gene ubiquitin-conjugating enzyme E2R 2 Neighboring gene predicted gene 12403 Neighboring gene ubiquitin-associated protein 2

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

    GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

    Pathways from BioSystems

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    RNA binding IEA
    Inferred from Electronic Annotation
    more info
     
    Process Evidence Code Pubs
    rRNA processing IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    tRNA export from nucleus IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    Component Evidence Code Pubs
    CURI complex IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    UTP-C complex IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    chromosome IEA
    Inferred from Electronic Annotation
    more info
     
    condensed nuclear chromosome IDA
    Inferred from Direct Assay
    more info
    PubMed 
    mitochondrion ISO
    Inferred from Sequence Orthology
    more info
     
    nucleolus IDA
    Inferred from Direct Assay
    more info
    PubMed 
    nucleolus ISO
    Inferred from Sequence Orthology
    more info
     
    nucleus ISO
    Inferred from Sequence Orthology
    more info
     
    small-subunit processome IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_139236.3NP_631982.2  nucleolar protein 6

      See identical proteins and their annotated locations for NP_631982.2

      Status: VALIDATED

      Source sequence(s)
      BC059820, CN459855
      Consensus CDS
      CCDS38715.1
      UniProtKB/Swiss-Prot
      Q8R5K4
      Related
      ENSMUSP00000030138.8, OTTMUSP00000007009, ENSMUST00000030138.8, OTTMUST00000015167
      Conserved Domains (1) summary
      pfam03813
      Location:1741144
      Nrap; Nrap protein

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm38.p4 C57BL/6J

    Genomic

    1. NC_000070.6 Reference GRCm38.p4 C57BL/6J

      Range
      41114427..41124339 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Suppressed Reference Sequence(s)

    The following Reference Sequences have been suppressed. Explain

    1. NM_139237.1: Suppressed sequence

      Description
      NM_139237.1: This RefSeq was temporarily suppressed because currently there is not sufficient data to support this transcript.
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