Format

Send to:

Choose Destination
    • Showing Current items.

    Clcc1 chloride channel CLIC-like 1 [ Mus musculus (house mouse) ]

    Gene ID: 229725, updated on 31-Jan-2019

    Summary

    Official Symbol
    Clcc1provided by MGI
    Official Full Name
    chloride channel CLIC-like 1provided by MGI
    Primary source
    MGI:MGI:2385186
    See related
    Ensembl:ENSMUSG00000027884
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Mclc
    Expression
    Ubiquitous expression in bladder adult (RPKM 9.9), limb E14.5 (RPKM 9.7) and 28 other tissues See more
    Orthologs

    Genomic context

    See Clcc1 in Genome Data Viewer
    Location:
    3; 3 F3
    Exon count:
    14
    Annotation release Status Assembly Chr Location
    106 current GRCm38.p4 (GCF_000001635.24) 3 NC_000069.6 (108653878..108678840)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 3 NC_000069.5 (108456831..108481758)

    Chromosome 3 - NC_000069.6Genomic Context describing neighboring genes Neighboring gene TATA-box binding protein associated factor 13 Neighboring gene WD repeat domain 47 Neighboring gene 40S ribosomal protein S23 pseudogene Neighboring gene G-protein signalling modulator 2 (AGS3-like, C. elegans) Neighboring gene AKNA domain containing 1 Neighboring gene syntaxin binding protein 3

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

    GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)

    General gene information

    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    chloride channel activity IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    chloride channel activity ISO
    Inferred from Sequence Orthology
    more info
     
    Process Evidence Code Pubs
    chloride transport ISO
    Inferred from Sequence Orthology
    more info
     
    ion transport IEA
    Inferred from Electronic Annotation
    more info
     
    Component Evidence Code Pubs
    Golgi apparatus ISO
    Inferred from Sequence Orthology
    more info
     
    colocalizes_with Golgi apparatus ISO
    Inferred from Sequence Orthology
    more info
     
    chloride channel complex IEA
    Inferred from Electronic Annotation
    more info
     
    cytoplasm ISO
    Inferred from Sequence Orthology
    more info
     
    endoplasmic reticulum IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    endoplasmic reticulum ISO
    Inferred from Sequence Orthology
    more info
     
    colocalizes_with endoplasmic reticulum ISO
    Inferred from Sequence Orthology
    more info
     
    integral component of membrane IEA
    Inferred from Electronic Annotation
    more info
     
    intracellular membrane-bounded organelle ISO
    Inferred from Sequence Orthology
    more info
     
    membrane IEA
    Inferred from Electronic Annotation
    more info
     
    nucleus ISO
    Inferred from Sequence Orthology
    more info
     

    General protein information

    Preferred Names
    chloride channel CLIC-like protein 1
    Names
    Mid-1-related chloride channel 1

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001177770.2NP_001171241.1  chloride channel CLIC-like protein 1 isoform 1 precursor

      See identical proteins and their annotated locations for NP_001171241.1

      Status: VALIDATED

      Source sequence(s)
      AL671917, AL683823
      Consensus CDS
      CCDS51047.1
      UniProtKB/TrEMBL
      A2AEM2
      Related
      ENSMUSP00000102224.1, ENSMUST00000106613.1
      Conserved Domains (1) summary
      pfam05934
      Location:19544
      MCLC; Mid-1-related chloride channel (MCLC)
    2. NM_001177771.2NP_001171242.1  chloride channel CLIC-like protein 1 isoform 2 precursor

      See identical proteins and their annotated locations for NP_001171242.1

      Status: VALIDATED

      Source sequence(s)
      AL671917, AL683823, CF723950
      Consensus CDS
      CCDS17766.1
      UniProtKB/Swiss-Prot
      Q99LI2
      Related
      ENSMUSP00000029483.8, ENSMUST00000029483.14
      Conserved Domains (1) summary
      pfam05934
      Location:14539
      MCLC; Mid-1-related chloride channel (MCLC)
    3. NM_001355632.1NP_001342561.1  chloride channel CLIC-like protein 1 isoform 2 precursor

      Status: VALIDATED

      Source sequence(s)
      AL671917, AL683823
      Conserved Domains (1) summary
      pfam05934
      Location:14539
      MCLC; Mid-1-related chloride channel (MCLC)
    4. NM_145543.2NP_663518.1  chloride channel CLIC-like protein 1 isoform 2 precursor

      See identical proteins and their annotated locations for NP_663518.1

      Status: VALIDATED

      Source sequence(s)
      AL671917, BB848444, CF723950
      Consensus CDS
      CCDS17766.1
      UniProtKB/Swiss-Prot
      Q99LI2
      Related
      ENSMUSP00000102220.1, ENSMUST00000106609.7
      Conserved Domains (1) summary
      pfam05934
      Location:14539
      MCLC; Mid-1-related chloride channel (MCLC)

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm38.p4 C57BL/6J

    Genomic

    1. NC_000069.6 Reference GRCm38.p4 C57BL/6J

      Range
      108653878..108678840
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006501416.3XP_006501479.1  chloride channel CLIC-like protein 1 isoform X1

      UniProtKB/Swiss-Prot
      Q99LI2
      Conserved Domains (1) summary
      pfam05934
      Location:14539
      MCLC; Mid-1-related chloride channel (MCLC)
    2. XM_017319561.1XP_017175050.1  chloride channel CLIC-like protein 1 isoform X1

      UniProtKB/Swiss-Prot
      Q99LI2
      Conserved Domains (1) summary
      pfam05934
      Location:14539
      MCLC; Mid-1-related chloride channel (MCLC)

    RNA

    1. XR_001783688.1 RNA Sequence

    2. XR_001783687.1 RNA Sequence

    Support Center