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    Golph3l golgi phosphoprotein 3-like [ Mus musculus (house mouse) ]

    Gene ID: 229593, updated on 23-Jun-2021

    Summary

    Official Symbol
    Golph3lprovided by MGI
    Official Full Name
    golgi phosphoprotein 3-likeprovided by MGI
    Primary source
    MGI:MGI:1917129
    See related
    Ensembl:ENSMUSG00000046519
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    GPP; C77637; Gpp34r; AU015439; AW549227; 2010204I15Rik
    Expression
    Ubiquitous expression in colon adult (RPKM 12.9), liver E14 (RPKM 11.0) and 28 other tissues See more
    Orthologs
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    Genomic context

    See Golph3l in Genome Data Viewer
    Location:
    3; 3 F2.1
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    109 current GRCm39 (GCF_000001635.27) 3 NC_000069.7 (95496227..95526558)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 3 NC_000069.6 (95588915..95619247)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 3 NC_000069.5 (95392856..95423169)

    Chromosome 3 - NC_000069.7Genomic Context describing neighboring genes Neighboring gene high mobility group box 1, pseudogene 5 Neighboring gene cathepsin S Neighboring gene HORMA domain containing 1 Neighboring gene predicted gene, 40097 Neighboring gene ribosomal protein S10, pseudogene 1 Neighboring gene endosulfine alpha

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    General gene information

    Markers

    Homology

    Clone Names

    • MGC28597

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables lipid binding IEA
    Inferred from Electronic Annotation
    more info
     
    enables phosphatidylinositol-4-phosphate binding IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    enables phosphatidylinositol-4-phosphate binding ISO
    Inferred from Sequence Orthology
    more info
     
    Process Evidence Code Pubs
    involved_in Golgi organization IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    involved_in Golgi organization ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in Golgi to plasma membrane protein transport IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    involved_in Golgi vesicle budding IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    involved_in positive regulation of protein secretion ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    Component Evidence Code Pubs
    located_in Golgi apparatus ISO
    Inferred from Sequence Orthology
    more info
     
    is_active_in Golgi cisterna IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    is_active_in cytosol IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    located_in cytosol ISO
    Inferred from Sequence Orthology
    more info
     
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
     
    is_active_in trans-Golgi network IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 

    General protein information

    Preferred Names
    Golgi phosphoprotein 3-like

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001177669.1NP_001171140.1  Golgi phosphoprotein 3-like isoform 2

      See identical proteins and their annotated locations for NP_001171140.1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (2) lacks an alternate in-frame exon in the 5' coding region, compared to variant 1, resulting in an isoform (2) that is shorter than isoform 1.
      Source sequence(s)
      AK160454, BC047147, BY107376, BY381725
      Consensus CDS
      CCDS57235.1
      UniProtKB/Swiss-Prot
      Q8R088
      UniProtKB/TrEMBL
      K3W4N3
      Related
      ENSMUSP00000058654.6, ENSMUST00000060323.12
      Conserved Domains (1) summary
      pfam05719
      Location:55252
      GPP34; Golgi phosphoprotein 3 (GPP34)
    2. NM_001177670.1NP_001171141.1  Golgi phosphoprotein 3-like isoform 3

      See identical proteins and their annotated locations for NP_001171141.1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (3) lacks an alternate segment in the 3' coding region and 3' UTR, compared to variant 1, resulting in an isoform (3) with a shorter and distinct C-terminus, compared to isoform 1.
      Source sequence(s)
      AK167675, BC047147, BY107376, BY381725
      Consensus CDS
      CCDS57234.1
      UniProtKB/Swiss-Prot
      Q8R088
      UniProtKB/TrEMBL
      K3W4Q3
      Related
      ENSMUSP00000096460.5, ENSMUST00000098861.11
      Conserved Domains (1) summary
      pfam05719
      Location:106269
      GPP34; Golgi phosphoprotein 3 (GPP34)
    3. NM_146133.3NP_666245.2  Golgi phosphoprotein 3-like isoform 1

      See identical proteins and their annotated locations for NP_666245.2

      Status: VALIDATED

      Description
      Transcript Variant: This variant (1) represents the longest transcript and encodes the longest isoform (1).
      Source sequence(s)
      BC047147, BY107376, BY381725
      Consensus CDS
      CCDS17616.2
      UniProtKB/Swiss-Prot
      Q8R088
      UniProtKB/TrEMBL
      H3BJ07
      Related
      ENSMUSP00000134799.2, ENSMUST00000177390.8
      Conserved Domains (1) summary
      pfam05719
      Location:106315
      GPP34; Golgi phosphoprotein 3 (GPP34)

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000069.7 Reference GRCm39 C57BL/6J

      Range
      95496227..95526558
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_017319544.3XP_017175033.1  Golgi phosphoprotein 3-like isoform X1

      Related
      ENSMUSP00000135056.2, ENSMUST00000176541.2
      Conserved Domains (1) summary
      pfam05719
      Location:106159
      GPP34; Golgi phosphoprotein 3 (GPP34)
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