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    Fam160a1 family with sequence similarity 160, member A1 [ Mus musculus (house mouse) ]

    Gene ID: 229488, updated on 23-May-2018

    Summary

    Official Symbol
    Fam160a1provided by MGI
    Official Full Name
    family with sequence similarity 160, member A1provided by MGI
    Primary source
    MGI:MGI:2444746
    See related
    Ensembl:ENSMUSG00000051000 Vega:OTTMUSG00000026671
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    9930021J17Rik
    Expression
    Broad expression in mammary gland adult (RPKM 10.7), heart adult (RPKM 10.2) and 17 other tissues See more
    Orthologs

    Genomic context

    See Fam160a1 in Genome Data Viewer
    Location:
    3; 3 F1
    Exon count:
    14
    Annotation release Status Assembly Chr Location
    106 current GRCm38.p4 (GCF_000001635.24) 3 NC_000069.6 (85660063..85785302, complement)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 3 NC_000069.5 (85463985..85550131, complement)

    Chromosome 3 - NC_000069.6Genomic Context describing neighboring genes Neighboring gene predicted gene 3740 Neighboring gene predicted gene, 46809 Neighboring gene glutamyl-tRNA(Gln) amidotransferase, subunit B Neighboring gene predicted gene, 40082 Neighboring gene proteasome (prosome, macropain) subunit, alpha type 1 pseudogene Neighboring gene glycosyltransferase 28 domain containing 2 Neighboring gene predicted gene 9790

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Targeted (2) 

    General gene information

    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    molecular_function ND
    No biological Data available
    more info
     
    Process Evidence Code Pubs
    biological_process ND
    No biological Data available
    more info
     
    Component Evidence Code Pubs
    cellular_component ND
    No biological Data available
    more info
     

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_172682.3NP_766270.2  protein FAM160A1

      See identical proteins and their annotated locations for NP_766270.2

      Status: VALIDATED

      Source sequence(s)
      AI481830, AK036881, DV651332, DV659303
      Consensus CDS
      CCDS17442.2
      UniProtKB/Swiss-Prot
      Q505K2
      Related
      ENSMUSP00000113235.1, OTTMUSP00000032974, ENSMUST00000118408.7, OTTMUST00000065994
      Conserved Domains (1) summary
      pfam10257
      Location:88411
      RAI16-like; Retinoic acid induced 16-like protein

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm38.p4 C57BL/6J

    Genomic

    1. NC_000069.6 Reference GRCm38.p4 C57BL/6J

      Range
      85660063..85785302 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_011240082.2XP_011238384.1  protein FAM160A1 isoform X1

      See identical proteins and their annotated locations for XP_011238384.1

      UniProtKB/Swiss-Prot
      Q505K2
      Conserved Domains (1) summary
      pfam10257
      Location:88411
      RAI16-like; Retinoic acid induced 16-like protein
    2. XM_006501333.3XP_006501396.1  protein FAM160A1 isoform X1

      See identical proteins and their annotated locations for XP_006501396.1

      UniProtKB/Swiss-Prot
      Q505K2
      Related
      ENSMUSP00000091700.4, ENSMUST00000094148.5
      Conserved Domains (1) summary
      pfam10257
      Location:88411
      RAI16-like; Retinoic acid induced 16-like protein
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