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    4932438A13Rik RIKEN cDNA 4932438A13 gene [ Mus musculus (house mouse) ]

    Gene ID: 229227, updated on 23-Jun-2021

    Summary

    Official Symbol
    4932438A13Rikprovided by MGI
    Official Full Name
    RIKEN cDNA 4932438A13 geneprovided by MGI
    Primary source
    MGI:MGI:2444631
    See related
    Ensembl:ENSMUSG00000037270
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    F; FSA; Tweek; Kiaa1109; 4732443H21; B830039D19Rik; D630029K19Rik
    Expression
    Ubiquitous expression in testis adult (RPKM 7.1), CNS E18 (RPKM 6.6) and 27 other tissues See more
    Orthologs
    NEW
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    Genomic context

    See 4932438A13Rik in Genome Data Viewer
    Location:
    3; 3 B
    Exon count:
    88
    Annotation release Status Assembly Chr Location
    109 current GRCm39 (GCF_000001635.27) 3 NC_000069.7 (36917212..37107182)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 3 NC_000069.6 (36863063..37053033)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 3 NC_000069.5 (36762028..36951955)

    Chromosome 3 - NC_000069.7Genomic Context describing neighboring genes Neighboring gene transient receptor potential cation channel, subfamily C, member 3 Neighboring gene predicted gene, 35856 Neighboring gene protein tyrosine phosphatase, mitochondrial 1 pseudogene Neighboring gene adenosine deaminase domain containing 1 (testis specific) Neighboring gene zinc finger, CCHC domain containing 17 pseudogene Neighboring gene nucleophosmin 1 pseudogene

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Gene trapped (1) 
    • Targeted (2) 

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Homology

    Clone Names

    • MGC90861

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
     
    Process Evidence Code Pubs
    involved_in adipose tissue development NAS
    Non-traceable Author Statement
    more info
    PubMed 
    involved_in endocytic recycling ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in endosomal transport ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in fat cell differentiation NAS
    Non-traceable Author Statement
    more info
    PubMed 
    involved_in lipid metabolic process NAS
    Non-traceable Author Statement
    more info
    PubMed 
    involved_in lipid storage NAS
    Non-traceable Author Statement
    more info
    PubMed 
    involved_in nucleus localization NAS
    Non-traceable Author Statement
    more info
    PubMed 
    involved_in phagocytosis ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in regulation of cell growth NAS
    Non-traceable Author Statement
    more info
    PubMed 
    involved_in spermatogenesis NAS
    Non-traceable Author Statement
    more info
    PubMed 
    involved_in synaptic vesicle endocytosis IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    Component Evidence Code Pubs
    located_in integral component of membrane IEA
    Inferred from Electronic Annotation
    more info
     
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
     
    located_in nucleus NAS
    Non-traceable Author Statement
    more info
    PubMed 

    General protein information

    Preferred Names
    transmembrane protein KIAA1109
    Names
    fragile site-associated protein homolog

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_172679.2NP_766267.2  transmembrane protein KIAA1109

      See identical proteins and their annotated locations for NP_766267.2

      Status: VALIDATED

      Source sequence(s)
      AK028716, AK030086, AK173100, AK220265, AL645759, AL691425, BC079623, BM250453, BM937557, BU057575, BY292679, CF536597
      Consensus CDS
      CCDS50894.1
      UniProtKB/Swiss-Prot
      A2AAE1
      UniProtKB/TrEMBL
      Q8CDG7
      Related
      ENSMUSP00000060199.9, ENSMUST00000057272.15
      Conserved Domains (1) summary
      pfam10479
      Location:43804987
      FSA_C; Fragile site-associated protein C-terminus

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000069.7 Reference GRCm39 C57BL/6J

      Range
      36917212..37107182
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006535446.4XP_006535509.1  transmembrane protein KIAA1109 isoform X1

      Conserved Domains (1) summary
      pfam10479
      Location:44695076
      FSA_C; Fragile site-associated protein C-terminus
    2. XM_017319536.2XP_017175025.1  transmembrane protein KIAA1109 isoform X4

      Conserved Domains (1) summary
      pfam10479
      Location:44685075
      FSA_C; Fragile site-associated protein C-terminus
    3. XM_006535452.4XP_006535515.1  transmembrane protein KIAA1109 isoform X8

      Conserved Domains (1) summary
      pfam10479
      Location:44345041
      FSA_C; Fragile site-associated protein C-terminus
    4. XM_006535453.4XP_006535516.1  transmembrane protein KIAA1109 isoform X9

      Conserved Domains (1) summary
      pfam10479
      Location:44335040
      FSA_C; Fragile site-associated protein C-terminus
    5. XM_006535454.4XP_006535517.1  transmembrane protein KIAA1109 isoform X10

      Conserved Domains (1) summary
      pfam10479
      Location:44225029
      FSA_C; Fragile site-associated protein C-terminus
    6. XM_006535451.4XP_006535514.1  transmembrane protein KIAA1109 isoform X7

      Conserved Domains (1) summary
      pfam10479
      Location:44485055
      FSA_C; Fragile site-associated protein C-terminus
    7. XM_030252556.1XP_030108416.1  transmembrane protein KIAA1109 isoform X11

      Conserved Domains (1) summary
      pfam10479
      Location:44135020
      FSA_C; Fragile site-associated protein C-terminus
    8. XM_036163028.1XP_036018921.1  transmembrane protein KIAA1109 isoform X12

      Conserved Domains (1) summary
      pfam10479
      Location:44125019
      FSA_C; Fragile site-associated protein C-terminus
    9. XM_006535456.4XP_006535519.1  transmembrane protein KIAA1109 isoform X14

      Conserved Domains (1) summary
      pfam10479
      Location:44015008
      FSA_C; Fragile site-associated protein C-terminus
    10. XM_006535455.4XP_006535518.1  transmembrane protein KIAA1109 isoform X13

      Conserved Domains (1) summary
      pfam10479
      Location:44025009
      FSA_C; Fragile site-associated protein C-terminus
    11. XM_036163029.1XP_036018922.1  transmembrane protein KIAA1109 isoform X16

      Conserved Domains (1) summary
      pfam10479
      Location:43674974
      FSA_C; Fragile site-associated protein C-terminus
    12. XM_036163030.1XP_036018923.1  transmembrane protein KIAA1109 isoform X17

      Conserved Domains (1) summary
      pfam10479
      Location:43664973
      FSA_C; Fragile site-associated protein C-terminus
    13. XM_017319537.2XP_017175026.1  transmembrane protein KIAA1109 isoform X15

      Conserved Domains (1) summary
      pfam10479
      Location:43814988
      FSA_C; Fragile site-associated protein C-terminus
    14. XM_017319538.2XP_017175027.1  transmembrane protein KIAA1109 isoform X18

      Conserved Domains (1) summary
      pfam10479
      Location:43464953
      FSA_C; Fragile site-associated protein C-terminus
    15. XM_006535450.4XP_006535513.1  transmembrane protein KIAA1109 isoform X6

      Conserved Domains (1) summary
      pfam10479
      Location:44525059
      FSA_C; Fragile site-associated protein C-terminus
    16. XM_006535448.4XP_006535511.1  transmembrane protein KIAA1109 isoform X3

      Conserved Domains (1) summary
      pfam10479
      Location:44685075
      FSA_C; Fragile site-associated protein C-terminus
    17. XM_006535447.4XP_006535510.1  transmembrane protein KIAA1109 isoform X2

      Conserved Domains (1) summary
      pfam10479
      Location:44685075
      FSA_C; Fragile site-associated protein C-terminus
    18. XM_036163027.1XP_036018920.1  transmembrane protein KIAA1109 isoform X5

      Conserved Domains (1) summary
      pfam10479
      Location:44675074
      FSA_C; Fragile site-associated protein C-terminus

    RNA

    1. XR_001783681.2 RNA Sequence

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