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    Zbtb10 zinc finger and BTB domain containing 10 [ Mus musculus (house mouse) ]

    Gene ID: 229055, updated on 5-Aug-2018

    Summary

    Official Symbol
    Zbtb10provided by MGI
    Official Full Name
    zinc finger and BTB domain containing 10provided by MGI
    Primary source
    MGI:MGI:2139883
    See related
    Ensembl:ENSMUSG00000069114 Vega:OTTMUSG00000033722
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    RINZF; AU021107; 4832414A18
    Expression
    Broad expression in placenta adult (RPKM 9.7), CNS E11.5 (RPKM 3.6) and 18 other tissues See more
    Orthologs

    Genomic context

    See Zbtb10 in Genome Data Viewer
    Location:
    3; 3 A1
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    106 current GRCm38.p4 (GCF_000001635.24) 3 NC_000069.6 (9250567..9285333)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 3 NC_000069.5 (9250567..9285333)

    Chromosome 3 - NC_000069.6Genomic Context describing neighboring genes Neighboring gene predicted gene, 41996 Neighboring gene predicted gene, 33018 Neighboring gene predicted gene, 41997 Neighboring gene RIKEN cDNA C030034L19 gene

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    DNA binding ISO
    Inferred from Sequence Orthology
    more info
     
    RNA polymerase II regulatory region sequence-specific DNA binding ISO
    Inferred from Sequence Orthology
    more info
     
    Process Evidence Code Pubs
    negative regulation of transcription by RNA polymerase II ISO
    Inferred from Sequence Orthology
    more info
     
    Component Evidence Code Pubs
    nucleoplasm ISO
    Inferred from Sequence Orthology
    more info
     

    General protein information

    Preferred Names
    zinc finger and BTB domain-containing protein 10

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_177660.3NP_808328.2  zinc finger and BTB domain-containing protein 10

      Status: VALIDATED

      Source sequence(s)
      AC126450, AK048280, AK048365, AK083443, BM899487, BY718125, CB525445, CJ114435, CK341409
      Consensus CDS
      CCDS50861.1
      UniProtKB/TrEMBL
      E9Q8X5, Q8BNK5
      Related
      ENSMUSP00000119386.1, OTTMUSP00000045825, ENSMUST00000155203.1, OTTMUST00000084940
      Conserved Domains (6) summary
      smart00225
      Location:358454
      BTB; Broad-Complex, Tramtrack and Bric a brac
      smart00597
      Location:242309
      ZnF_TTF; zinc finger in transposases and transcription factors
      sd00017
      Location:716736
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam00651
      Location:347453
      BTB; BTB/POZ domain
      pfam13465
      Location:729753
      zf-H2C2_2; Zinc-finger double domain
      pfam13909
      Location:714738
      zf-H2C2_5; C2H2-type zinc-finger domain

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm38.p4 C57BL/6J

    Genomic

    1. NC_000069.6 Reference GRCm38.p4 C57BL/6J

      Range
      9250567..9285333
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
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