Format

Send to:

Choose Destination
    • Showing Current items.

    Zfp217 zinc finger protein 217 [ Mus musculus (house mouse) ]

    Gene ID: 228913, updated on 12-Aug-2018

    Summary

    Official Symbol
    Zfp217provided by MGI
    Official Full Name
    zinc finger protein 217provided by MGI
    Primary source
    MGI:MGI:2685408
    See related
    Ensembl:ENSMUSG00000052056 Vega:OTTMUSG00000016078
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Gm562; ZABC1; Znf217; AW987152; 4933431C08Rik
    Expression
    Broad expression in testis adult (RPKM 23.1), thymus adult (RPKM 7.0) and 23 other tissues See more
    Orthologs

    Genomic context

    See Zfp217 in Genome Data Viewer
    Location:
    2 H3; 2 89.91 cM
    Exon count:
    16
    Annotation release Status Assembly Chr Location
    106 current GRCm38.p4 (GCF_000001635.24) 2 NC_000068.7 (170108643..170151679, complement)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 2 NC_000068.6 (169934143..169968175, complement)

    Chromosome 2 - NC_000068.7Genomic Context describing neighboring genes Neighboring gene teashirt zinc finger family member 2 Neighboring gene cDNA sequence AY702102 Neighboring gene RIKEN cDNA A630075F10 gene Neighboring gene predicted gene, 34403 Neighboring gene predicted gene, 17619

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

    GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Homology

    Gene Ontology Provided by MGI

    Process Evidence Code Pubs
    cell aging ISO
    Inferred from Sequence Orthology
    more info
     
    negative regulation of transcription by RNA polymerase II ISO
    Inferred from Sequence Orthology
    more info
     
    negative regulation of transcription, DNA-templated IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    negative regulation of transcription, DNA-templated ISO
    Inferred from Sequence Orthology
    more info
     
    regulation of transcription, DNA-templated ISO
    Inferred from Sequence Orthology
    more info
     
    Component Evidence Code Pubs
    histone deacetylase complex ISO
    Inferred from Sequence Orthology
    more info
     
    mitochondrion ISO
    Inferred from Sequence Orthology
    more info
     
    nuclear speck ISO
    Inferred from Sequence Orthology
    more info
     
    nucleoplasm ISO
    Inferred from Sequence Orthology
    more info
     

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001033299.3NP_001028471.1  zinc finger protein 217

      See identical proteins and their annotated locations for NP_001028471.1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (1) represents the longer transcript.
      Source sequence(s)
      AK163381, AL844576, BC116330
      Consensus CDS
      CCDS17120.1
      UniProtKB/TrEMBL
      Q3U0X6
      Related
      ENSMUSP00000067334.6, ENSMUST00000063710.12
      Conserved Domains (4) summary
      sd00017
      Location:123143
      ZF_C2H2; C2H2 Zn finger [structural motif]
      sd00019
      Location:480500
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam00096
      Location:479500
      zf-C2H2; Zinc finger, C2H2 type
      pfam13465
      Location:492517
      zf-H2C2_2; Zinc-finger double domain
    2. NM_001159683.1NP_001153155.1  zinc finger protein 217

      See identical proteins and their annotated locations for NP_001153155.1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (2) differs in the 5' UTR compared to variant 1. Both variants encode the same protein.
      Source sequence(s)
      AK139547, AL844576, BC116330
      Consensus CDS
      CCDS17120.1
      UniProtKB/TrEMBL
      Q3U0X6
      Related
      ENSMUSP00000104783.1, OTTMUSP00000017196, ENSMUST00000109155.7, OTTMUST00000038383
      Conserved Domains (4) summary
      sd00017
      Location:123143
      ZF_C2H2; C2H2 Zn finger [structural motif]
      sd00019
      Location:480500
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam00096
      Location:479500
      zf-C2H2; Zinc finger, C2H2 type
      pfam13465
      Location:492517
      zf-H2C2_2; Zinc-finger double domain

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm38.p4 C57BL/6J

    Genomic

    1. NC_000068.7 Reference GRCm38.p4 C57BL/6J

      Range
      170108643..170151679 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006499428.2XP_006499491.1  zinc finger protein 217 isoform X1

      See identical proteins and their annotated locations for XP_006499491.1

      UniProtKB/TrEMBL
      Q3U0X6
      Conserved Domains (4) summary
      sd00017
      Location:123143
      ZF_C2H2; C2H2 Zn finger [structural motif]
      sd00019
      Location:480500
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam00096
      Location:479500
      zf-C2H2; Zinc finger, C2H2 type
      pfam13465
      Location:492517
      zf-H2C2_2; Zinc-finger double domain
    2. XM_006499430.2XP_006499493.1  zinc finger protein 217 isoform X1

      See identical proteins and their annotated locations for XP_006499493.1

      UniProtKB/TrEMBL
      Q3U0X6
      Conserved Domains (4) summary
      sd00017
      Location:123143
      ZF_C2H2; C2H2 Zn finger [structural motif]
      sd00019
      Location:480500
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam00096
      Location:479500
      zf-C2H2; Zinc finger, C2H2 type
      pfam13465
      Location:492517
      zf-H2C2_2; Zinc-finger double domain
    3. XM_006499434.3XP_006499497.1  zinc finger protein 217 isoform X2

      Conserved Domains (4) summary
      sd00017
      Location:123143
      ZF_C2H2; C2H2 Zn finger [structural motif]
      sd00019
      Location:480500
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam00096
      Location:479500
      zf-C2H2; Zinc finger, C2H2 type
      pfam13465
      Location:492517
      zf-H2C2_2; Zinc-finger double domain
    4. XM_006499427.3XP_006499490.1  zinc finger protein 217 isoform X1

      See identical proteins and their annotated locations for XP_006499490.1

      UniProtKB/TrEMBL
      Q3U0X6
      Conserved Domains (4) summary
      sd00017
      Location:123143
      ZF_C2H2; C2H2 Zn finger [structural motif]
      sd00019
      Location:480500
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam00096
      Location:479500
      zf-C2H2; Zinc finger, C2H2 type
      pfam13465
      Location:492517
      zf-H2C2_2; Zinc-finger double domain
    5. XM_006499429.3XP_006499492.1  zinc finger protein 217 isoform X1

      See identical proteins and their annotated locations for XP_006499492.1

      UniProtKB/TrEMBL
      Q3U0X6
      Conserved Domains (4) summary
      sd00017
      Location:123143
      ZF_C2H2; C2H2 Zn finger [structural motif]
      sd00019
      Location:480500
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam00096
      Location:479500
      zf-C2H2; Zinc finger, C2H2 type
      pfam13465
      Location:492517
      zf-H2C2_2; Zinc-finger double domain
    6. XM_006499431.2XP_006499494.1  zinc finger protein 217 isoform X1

      See identical proteins and their annotated locations for XP_006499494.1

      UniProtKB/TrEMBL
      Q3U0X6
      Conserved Domains (4) summary
      sd00017
      Location:123143
      ZF_C2H2; C2H2 Zn finger [structural motif]
      sd00019
      Location:480500
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam00096
      Location:479500
      zf-C2H2; Zinc finger, C2H2 type
      pfam13465
      Location:492517
      zf-H2C2_2; Zinc-finger double domain
    7. XM_006499432.3XP_006499495.1  zinc finger protein 217 isoform X1

      See identical proteins and their annotated locations for XP_006499495.1

      UniProtKB/TrEMBL
      Q3U0X6
      Conserved Domains (4) summary
      sd00017
      Location:123143
      ZF_C2H2; C2H2 Zn finger [structural motif]
      sd00019
      Location:480500
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam00096
      Location:479500
      zf-C2H2; Zinc finger, C2H2 type
      pfam13465
      Location:492517
      zf-H2C2_2; Zinc-finger double domain
    8. XM_006499433.3XP_006499496.1  zinc finger protein 217 isoform X1

      See identical proteins and their annotated locations for XP_006499496.1

      UniProtKB/TrEMBL
      Q3U0X6
      Conserved Domains (4) summary
      sd00017
      Location:123143
      ZF_C2H2; C2H2 Zn finger [structural motif]
      sd00019
      Location:480500
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam00096
      Location:479500
      zf-C2H2; Zinc finger, C2H2 type
      pfam13465
      Location:492517
      zf-H2C2_2; Zinc-finger double domain
    Support Center