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    Ncoa5 nuclear receptor coactivator 5 [ Mus musculus (house mouse) ]

    Gene ID: 228869, updated on 23-Jun-2021

    Summary

    Official Symbol
    Ncoa5provided by MGI
    Official Full Name
    nuclear receptor coactivator 5provided by MGI
    Primary source
    MGI:MGI:2385165
    See related
    Ensembl:ENSMUSG00000039804
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    CIA
    Expression
    Ubiquitous expression in whole brain E14.5 (RPKM 28.4), CNS E18 (RPKM 25.7) and 28 other tissues See more
    Orthologs
    NEW
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    Try the new Transcript table

    Genomic context

    See Ncoa5 in Genome Data Viewer
    Location:
    2; 2 H3
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    109 current GRCm39 (GCF_000001635.27) 2 NC_000068.8 (164842273..164876794, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 2 NC_000068.7 (165000353..165034871, complement)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 2 NC_000068.6 (164825857..164860279, complement)

    Chromosome 2 - NC_000068.8Genomic Context describing neighboring genes Neighboring gene matrix metallopeptidase 9 Neighboring gene solute carrier family 12, member 5 Neighboring gene heat shock protein 90, alpha (cytosolic), class A member 1 pseudogene Neighboring gene CD40 antigen Neighboring gene RIKEN cDNA 1700025C18 gene

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Homology

    Clone Names

    • MGC28864

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables chromatin binding IDA
    Inferred from Direct Assay
    more info
    PubMed 
    Component Evidence Code Pubs
    located_in actin cytoskeleton ISO
    Inferred from Sequence Orthology
    more info
     
    located_in nucleoplasm ISO
    Inferred from Sequence Orthology
    more info
     
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
     

    General protein information

    Preferred Names
    nuclear receptor coactivator 5
    Names
    NCoA-5
    coactivator independent of AF-2

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_144892.1NP_659141.1  nuclear receptor coactivator 5

      See identical proteins and their annotated locations for NP_659141.1

      Status: VALIDATED

      Source sequence(s)
      BC017152
      Consensus CDS
      CCDS17068.1
      UniProtKB/Swiss-Prot
      Q91W39
      Related
      ENSMUSP00000046388.9, ENSMUST00000040381.15
      Conserved Domains (2) summary
      COG0124
      Location:186256
      HisS; Histidyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
      PRK14971
      Location:459543
      PRK14971; DNA polymerase III subunits gamma and tau; Provisional

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000068.8 Reference GRCm39 C57BL/6J

      Range
      164842273..164876794 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006499369.5XP_006499432.2  nuclear receptor coactivator 5 isoform X1

      UniProtKB/TrEMBL
      B7ZC24
      Related
      ENSMUSP00000113166.2, ENSMUST00000122070.2
      Conserved Domains (1) summary
      COG0124
      Location:186256
      HisS; Histidyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
    2. XM_030250665.1XP_030106525.1  nuclear receptor coactivator 5 isoform X3

    3. XM_036161618.1XP_036017511.1  nuclear receptor coactivator 5 isoform X3

    4. XM_017317897.2XP_017173386.1  nuclear receptor coactivator 5 isoform X2

      Conserved Domains (1) summary
      COG0124
      Location:38108
      HisS; Histidyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
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