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    6820408C15Rik RIKEN cDNA 6820408C15 gene [ Mus musculus (house mouse) ]

    Gene ID: 228778, updated on 31-Jan-2019

    Summary

    Official Symbol
    6820408C15Rikprovided by MGI
    Official Full Name
    RIKEN cDNA 6820408C15 geneprovided by MGI
    Primary source
    MGI:MGI:3045333
    See related
    Ensembl:ENSMUSG00000032680
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Expression
    Biased expression in testis adult (RPKM 7.1), lung adult (RPKM 0.9) and 6 other tissues See more
    Orthologs

    Genomic context

    See 6820408C15Rik in Genome Data Viewer
    Location:
    2; 2 G3
    Exon count:
    14
    Annotation release Status Assembly Chr Location
    106 current GRCm38.p4 (GCF_000001635.24) 2 NC_000068.7 (152415587..152444336)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 2 NC_000068.6 (152241323..152270064)

    Chromosome 2 - NC_000068.7Genomic Context describing neighboring genes Neighboring gene SRY (sex determining region Y)-box 12 Neighboring gene zinc finger, CCHC domain containing 3 Neighboring gene predicted gene, 39960 Neighboring gene defensin beta 23

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    General gene information

    Markers

    Homology

    Clone Names

    • RP23-453K8.1

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    molecular_function ND
    No biological Data available
    more info
     
    Process Evidence Code Pubs
    biological_process ND
    No biological Data available
    more info
     
    Component Evidence Code Pubs
    cellular_component ND
    No biological Data available
    more info
     

    General protein information

    Preferred Names
    uncharacterized protein C20orf96 homolog

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001289738.1NP_001276667.1  uncharacterized protein C20orf96 homolog isoform 1

      See identical proteins and their annotated locations for NP_001276667.1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (1) encodes the longer isoform (1).
      Source sequence(s)
      AK078482, AW048149, BC137826
      UniProtKB/TrEMBL
      B2RQ99, Q8BJX2
      Conserved Domains (1) summary
      pfam15397
      Location:97354
      DUF4618; Domain of unknown function (DUF4618)
    2. NM_177656.4NP_808324.1  uncharacterized protein C20orf96 homolog isoform 2

      See identical proteins and their annotated locations for NP_808324.1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (2) uses an alternate in-frame splice site in the 5' coding region, compared to variant 1. It encodes isoform 2, which is shorter than isoform 1.
      Source sequence(s)
      AK078482, AW048149
      Consensus CDS
      CCDS16885.1
      UniProtKB/TrEMBL
      Q8BJX2
      Related
      ENSMUSP00000037024.5, ENSMUST00000039961.11
      Conserved Domains (1) summary
      pfam15397
      Location:96353
      DUF4618; Domain of unknown function (DUF4618)

    RNA

    1. NR_110367.1 RNA Sequence

      Status: VALIDATED

      Description
      Transcript Variant: This variant (3) uses alternate splice sites in two internal exons, compared to variant 1. This variant is represented as non-coding because the use of the 5'-most expected translational start codon, as used in variant 1, renders the transcript a candidate for nonsense-mediated mRNA decay (NMD).
      Source sequence(s)
      AK078482, AW048149, BC144943
    2. NR_110368.1 RNA Sequence

      Status: VALIDATED

      Description
      Transcript Variant: This variant (4) lacks an internal exon and uses alternate splice sites in two internal exons, compared to variant 1. This variant is represented as non-coding because the use of the 5'-most expected translational start codon, as used in variant 1, renders the transcript a candidate for nonsense-mediated mRNA decay (NMD).
      Source sequence(s)
      AK078482, AW048149, BC144943

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm38.p4 C57BL/6J

    Genomic

    1. NC_000068.7 Reference GRCm38.p4 C57BL/6J

      Range
      152415587..152444336
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006499316.3XP_006499379.1  uncharacterized protein C20orf96 homolog isoform X3

      Conserved Domains (2) summary
      pfam15397
      Location:97296
      DUF4618; Domain of unknown function (DUF4618)
      cl23804
      Location:137262
      CAF1; CAF1 family ribonuclease
    2. XM_011239479.2XP_011237781.1  uncharacterized protein C20orf96 homolog isoform X1

      See identical proteins and their annotated locations for XP_011237781.1

      UniProtKB/TrEMBL
      B2RQ99
      Conserved Domains (1) summary
      pfam15397
      Location:97354
      DUF4618; Domain of unknown function (DUF4618)
    3. XM_011239480.2XP_011237782.1  uncharacterized protein C20orf96 homolog isoform X2

      See identical proteins and their annotated locations for XP_011237782.1

      UniProtKB/TrEMBL
      Q8BJX2
      Conserved Domains (1) summary
      pfam15397
      Location:96353
      DUF4618; Domain of unknown function (DUF4618)
    4. XM_006499318.3XP_006499381.1  uncharacterized protein C20orf96 homolog isoform X5

      Conserved Domains (1) summary
      pfam15397
      Location:2259
      DUF4618; Domain of unknown function (DUF4618)
    5. XM_006499317.3XP_006499380.1  uncharacterized protein C20orf96 homolog isoform X4

      Conserved Domains (1) summary
      pfam15397
      Location:27284
      DUF4618; Domain of unknown function (DUF4618)
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