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    4930402H24Rik RIKEN cDNA 4930402H24 gene [ Mus musculus (house mouse) ]

    Gene ID: 228602, updated on 31-Jan-2019

    Summary

    Official Symbol
    4930402H24Rikprovided by MGI
    Official Full Name
    RIKEN cDNA 4930402H24 geneprovided by MGI
    Primary source
    MGI:MGI:1923029
    See related
    Ensembl:ENSMUSG00000027309
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    C78926; AI413763; 2810487F15Rik
    Expression
    Ubiquitous expression in CNS E18 (RPKM 18.0), whole brain E14.5 (RPKM 16.2) and 28 other tissues See more
    Orthologs

    Genomic context

    See 4930402H24Rik in Genome Data Viewer
    Location:
    2 F1; 2
    Exon count:
    40
    Annotation release Status Assembly Chr Location
    106 current GRCm38.p4 (GCF_000001635.24) 2 NC_000068.7 (130706200..130840788, complement)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 2 NC_000068.6 (130533567..130665846, complement)

    Chromosome 2 - NC_000068.7Genomic Context describing neighboring genes Neighboring gene inosine triphosphatase (nucleoside triphosphate pyrophosphatase) Neighboring gene solute carrier family 4, sodium bicarbonate transporter-like, member 11 Neighboring gene chaperonin containing Tcp1, subunit 3 (gamma) pseudogene Neighboring gene Ppp1r14c pseudogene Neighboring gene RIKEN cDNA A730017L22 gene Neighboring gene proteasome (prosome, macropain) 26S subunit, non-ATPase, 11 pseudogene Neighboring gene attractin Neighboring gene high mobility group box 1 pseudogene

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Targeted (1) 

    General gene information

    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    molecular_function ND
    No biological Data available
    more info
     
    Process Evidence Code Pubs
    biological_process ND
    No biological Data available
    more info
     
    Component Evidence Code Pubs
    cellular_component ND
    No biological Data available
    more info
     

    General protein information

    Preferred Names
    uncharacterized protein C20orf194 homolog

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001311147.1NP_001298076.1  uncharacterized protein C20orf194 homolog isoform 2

      See identical proteins and their annotated locations for NP_001298076.1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (2) uses an alternate exon in the 5' UTR that results in the use of a downstream start codon compared to variant 1. The encoded isoform (2) has a shorter N-terminus compared to isoform 1.
      Source sequence(s)
      AK133294, AL772162
      Consensus CDS
      CCDS79848.1
      UniProtKB/TrEMBL
      Q3V0A7
      Related
      ENSMUSP00000113481.1, ENSMUST00000119422.7
    2. NM_029432.2NP_083708.1  uncharacterized protein C20orf194 homolog isoform 1

      See identical proteins and their annotated locations for NP_083708.1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (1) encodes the longer isoform (1).
      Source sequence(s)
      AK045996, AL772162, BC052447
      Consensus CDS
      CCDS16750.1
      UniProtKB/Swiss-Prot
      Q7TT23
      Related
      ENSMUSP00000046992.8, ENSMUST00000044766.14

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm38.p4 C57BL/6J

    Genomic

    1. NC_000068.7 Reference GRCm38.p4 C57BL/6J

      Range
      130706200..130840788 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_011239473.2XP_011237775.1  uncharacterized protein C20orf194 homolog isoform X1

    2. XM_011239474.2XP_011237776.1  uncharacterized protein C20orf194 homolog isoform X2

      See identical proteins and their annotated locations for XP_011237776.1

      UniProtKB/TrEMBL
      Q3V0A7
    3. XM_017317759.1XP_017173248.1  uncharacterized protein C20orf194 homolog isoform X3

    RNA

    1. XR_001782167.1 RNA Sequence

    Suppressed Reference Sequence(s)

    The following Reference Sequences have been suppressed. Explain

    1. NM_028367.1: Suppressed sequence

      Description
      NM_028367.1: This RefSeq was removed because currently there is insufficient support for the transcript and the protein.
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