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    Cstf3 cleavage stimulation factor, 3' pre-RNA, subunit 3 [ Mus musculus (house mouse) ]

    Gene ID: 228410, updated on 31-Jan-2019

    Summary

    Official Symbol
    Cstf3provided by MGI
    Official Full Name
    cleavage stimulation factor, 3' pre-RNA, subunit 3provided by MGI
    Primary source
    MGI:MGI:1351825
    See related
    Ensembl:ENSMUSG00000027176
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    C79532; CstF-77; 4732468G05Rik
    Expression
    Broad expression in CNS E11.5 (RPKM 8.3), CNS E14 (RPKM 7.4) and 24 other tissues See more
    Orthologs

    Genomic context

    See Cstf3 in Genome Data Viewer
    Location:
    2 E2; 2 54.84 cM
    Exon count:
    21
    Annotation release Status Assembly Chr Location
    106 current GRCm38.p4 (GCF_000001635.24) 2 NC_000068.7 (104590484..104665425)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 2 NC_000068.6 (104430641..104505582)

    Chromosome 2 - NC_000068.7Genomic Context describing neighboring genes Neighboring gene SWIM type zinc finger 7 associated protein 1 pseudogene Neighboring gene pluripotency associated transcript 14 Neighboring gene predicted gene, 39897 Neighboring gene t-complex 11 like 1 Neighboring gene predicted gene 6306 Neighboring gene protein (peptidyl-prolyl cis/trans isomerase) NIMA-interacting 1, retrogene 1

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Targeted (2) 

    Pathways from BioSystems

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Homology

    Clone Names

    • MGC6373

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    mRNA binding IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    Process Evidence Code Pubs
    RNA 3'-end processing IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    RNA processing IEA
    Inferred from Electronic Annotation
    more info
     
    mRNA processing IEA
    Inferred from Electronic Annotation
    more info
     
    Component Evidence Code Pubs
    nucleoplasm ISO
    Inferred from Sequence Orthology
    more info
     
    nucleus IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 

    General protein information

    Preferred Names
    cleavage stimulation factor subunit 3
    Names
    CF-1 77 kDa subunit
    CSTF 77 kDa subunit
    cleavage stimulation factor 77 kDa subunit

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001037326.2NP_001032403.1  cleavage stimulation factor subunit 3 isoform 3

      See identical proteins and their annotated locations for NP_001032403.1

      Status: VALIDATED

      Source sequence(s)
      AL844603
    2. NM_145529.3NP_663504.1  cleavage stimulation factor subunit 3 isoform 1

      See identical proteins and their annotated locations for NP_663504.1

      Status: VALIDATED

      Source sequence(s)
      AL844603
      Consensus CDS
      CCDS16490.1
      UniProtKB/Swiss-Prot
      Q99LI7
      Related
      ENSMUSP00000028599.7, ENSMUST00000028599.7
      Conserved Domains (3) summary
      smart00386
      Location:4577
      HAT; HAT (Half-A-TPR) repeats
      sd00006
      Location:3160
      TPR; TPR repeat [structural motif]
      pfam05843
      Location:375649
      Suf; Suppressor of forked protein (Suf)
    3. NM_177253.4NP_796227.1  cleavage stimulation factor subunit 3 isoform 2

      See identical proteins and their annotated locations for NP_796227.1

      Status: VALIDATED

      Source sequence(s)
      AL844603
      UniProtKB/TrEMBL
      Q8CE71
      Conserved Domains (2) summary
      smart00386
      Location:4577
      HAT; HAT (Half-A-TPR) repeats
      cl19115
      Location:6394
      Cupredoxin; Cupredoxin superfamily

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm38.p4 C57BL/6J

    Genomic

    1. NC_000068.7 Reference GRCm38.p4 C57BL/6J

      Range
      104590484..104665425
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
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