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    Agps alkylglycerone phosphate synthase [ Mus musculus (house mouse) ]

    Gene ID: 228061, updated on 31-Jan-2019

    Summary

    Official Symbol
    Agpsprovided by MGI
    Official Full Name
    alkylglycerone phosphate synthaseprovided by MGI
    Primary source
    MGI:MGI:2443065
    See related
    Ensembl:ENSMUSG00000042410
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    bs2; Adas; Adps; Adaps; Adhaps; Aldhpsy; AW123847; 5832437L22; 9930035G10Rik
    Expression
    Ubiquitous expression in mammary gland adult (RPKM 12.0), placenta adult (RPKM 9.8) and 26 other tissues See more
    Orthologs

    Genomic context

    See Agps in Genome Data Viewer
    Location:
    2; 2 C3
    Exon count:
    20
    Annotation release Status Assembly Chr Location
    106 current GRCm38.p4 (GCF_000001635.24) 2 NC_000068.7 (75832177..75931350)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 2 NC_000068.6 (75670234..75769407)

    Chromosome 2 - NC_000068.7Genomic Context describing neighboring genes Neighboring gene predicted gene 13669 Neighboring gene predicted gene, 34861 Neighboring gene tetratricopeptide repeat domain 30B Neighboring gene tetratricopeptide repeat domain 30A2

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)

    Pathways from BioSystems

    General gene information

    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    FAD binding IEA
    Inferred from Electronic Annotation
    more info
     
    alkylglycerone-phosphate synthase activity ISO
    Inferred from Sequence Orthology
    more info
     
    catalytic activity IEA
    Inferred from Electronic Annotation
    more info
     
    flavin adenine dinucleotide binding IEA
    Inferred from Electronic Annotation
    more info
     
    oxidoreductase activity IEA
    Inferred from Electronic Annotation
    more info
     
    transferase activity IEA
    Inferred from Electronic Annotation
    more info
     
    Process Evidence Code Pubs
    lipid biosynthetic process ISO
    Inferred from Sequence Orthology
    more info
     
    lipid metabolic process IEA
    Inferred from Electronic Annotation
    more info
     
    oxidation-reduction process IEA
    Inferred from Electronic Annotation
    more info
     
    Component Evidence Code Pubs
    mitochondrion HDA PubMed 
    mitochondrion ISO
    Inferred from Sequence Orthology
    more info
     
    nucleolus ISO
    Inferred from Sequence Orthology
    more info
     
    peroxisome ISO
    Inferred from Sequence Orthology
    more info
     

    General protein information

    Preferred Names
    alkyldihydroxyacetonephosphate synthase, peroxisomal
    Names
    alkyl-DHAP synthase
    NP_766254.2

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_172666.3NP_766254.2  alkyldihydroxyacetonephosphate synthase, peroxisomal

      Status: VALIDATED

      Source sequence(s)
      AL773533, BC063086, BQ176868, BY713473
      Consensus CDS
      CCDS16151.2
      UniProtKB/Swiss-Prot
      Q8C0I1
      UniProtKB/TrEMBL
      A2AL50
      Related
      ENSMUSP00000041967.7, ENSMUST00000047232.13
      Conserved Domains (3) summary
      COG0277
      Location:213665
      GlcD; FAD/FMN-containing dehydrogenase [Energy production and conversion]
      pfam01565
      Location:219362
      FAD_binding_4; FAD binding domain
      pfam02913
      Location:397670
      FAD-oxidase_C; FAD linked oxidases, C-terminal domain

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm38.p4 C57BL/6J

    Genomic

    1. NC_000068.7 Reference GRCm38.p4 C57BL/6J

      Range
      75832177..75931350
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
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