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    Agps alkylglycerone phosphate synthase [ Mus musculus (house mouse) ]

    Gene ID: 228061, updated on 23-Jun-2021

    Summary

    Official Symbol
    Agpsprovided by MGI
    Official Full Name
    alkylglycerone phosphate synthaseprovided by MGI
    Primary source
    MGI:MGI:2443065
    See related
    Ensembl:ENSMUSG00000042410
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    A; bs; bs2; Adas; Adps; Adaps; Adhaps; Aldhpsy; AW123847; 5832437L22; 9930035G10Rik
    Expression
    Ubiquitous expression in mammary gland adult (RPKM 12.0), placenta adult (RPKM 9.8) and 26 other tissues See more
    Orthologs
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    Genomic context

    See Agps in Genome Data Viewer
    Location:
    2; 2 C3
    Exon count:
    20
    Annotation release Status Assembly Chr Location
    109 current GRCm39 (GCF_000001635.27) 2 NC_000068.8 (75662477..75761694)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 2 NC_000068.7 (75832177..75931350)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 2 NC_000068.6 (75670234..75769407)

    Chromosome 2 - NC_000068.8Genomic Context describing neighboring genes Neighboring gene predicted gene, 54163 Neighboring gene predicted gene 13669 Neighboring gene predicted gene, 34861 Neighboring gene tetratricopeptide repeat domain 30B Neighboring gene predicted gene, 54164

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)

    Pathways from PubChem

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables FAD binding IEA
    Inferred from Electronic Annotation
    more info
     
    enables alkylglycerone-phosphate synthase activity ISO
    Inferred from Sequence Orthology
    more info
     
    enables catalytic activity IEA
    Inferred from Electronic Annotation
    more info
     
    enables flavin adenine dinucleotide binding IEA
    Inferred from Electronic Annotation
    more info
     
    enables oxidoreductase activity IEA
    Inferred from Electronic Annotation
    more info
     
    enables transferase activity IEA
    Inferred from Electronic Annotation
    more info
     
    Process Evidence Code Pubs
    acts_upstream_of_or_within lipid biosynthetic process ISO
    Inferred from Sequence Orthology
    more info
     
    acts_upstream_of_or_within lipid metabolic process IEA
    Inferred from Electronic Annotation
    more info
     
    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
     
    located_in mitochondrion HDA PubMed 
    located_in mitochondrion ISO
    Inferred from Sequence Orthology
    more info
     
    located_in nucleolus ISO
    Inferred from Sequence Orthology
    more info
     
    located_in peroxisomal matrix TAS
    Traceable Author Statement
    more info
     
    located_in peroxisome ISO
    Inferred from Sequence Orthology
    more info
     

    General protein information

    Preferred Names
    alkyldihydroxyacetonephosphate synthase, peroxisomal
    Names
    alkyl-DHAP synthase
    NP_766254.2

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_172666.3NP_766254.2  alkyldihydroxyacetonephosphate synthase, peroxisomal

      Status: VALIDATED

      Source sequence(s)
      AL773533, BC063086, BQ176868, BY713473
      Consensus CDS
      CCDS16151.2
      UniProtKB/Swiss-Prot
      Q8C0I1
      UniProtKB/TrEMBL
      A2AL50
      Related
      ENSMUSP00000041967.8, ENSMUST00000047232.14
      Conserved Domains (3) summary
      COG0277
      Location:213665
      GlcD; FAD/FMN-containing dehydrogenase [Energy production and conversion]
      pfam01565
      Location:219362
      FAD_binding_4; FAD binding domain
      pfam02913
      Location:397670
      FAD-oxidase_C; FAD linked oxidases, C-terminal domain

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000068.8 Reference GRCm39 C57BL/6J

      Range
      75662477..75761694
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    RNA

    1. XR_004939851.1 RNA Sequence

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