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    Zp1 zona pellucida glycoprotein 1 [ Mus musculus (house mouse) ]

    Gene ID: 22786, updated on 3-Sep-2018

    Summary

    Official Symbol
    Zp1provided by MGI
    Official Full Name
    zona pellucida glycoprotein 1provided by MGI
    Primary source
    MGI:MGI:103073
    See related
    Ensembl:ENSMUSG00000024734 Vega:OTTMUSG00000036734
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Expression
    Restricted expression toward ovary adult (RPKM 22.1) See more
    Orthologs

    Genomic context

    See Zp1 in Genome Data Viewer
    Location:
    19 A; 19 7.36 cM
    Exon count:
    12
    Annotation release Status Assembly Chr Location
    106 current GRCm38.p4 (GCF_000001635.24) 19 NC_000085.6 (10914296..10920601, complement)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 19 NC_000085.5 (10988786..10995091, complement)

    Chromosome 19 - NC_000085.6Genomic Context describing neighboring genes Neighboring gene transmembrane protein 109 Neighboring gene pre-mRNA processing factor 19 Neighboring gene prostaglandin D2 receptor 2 Neighboring gene coiled-coil domain containing 86 Neighboring gene membrane-spanning 4-domains, subfamily A, member 10

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

    GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)

    Pathways from BioSystems

    General gene information

    Markers

    Homology

    Gene Ontology Provided by MGI

    Process Evidence Code Pubs
    single fertilization IEA
    Inferred from Electronic Annotation
    more info
     
    Component Evidence Code Pubs
    extracellular matrix IDA
    Inferred from Direct Assay
    more info
    PubMed 
    extracellular region IEA
    Inferred from Electronic Annotation
    more info
     
    integral component of membrane IEA
    Inferred from Electronic Annotation
    more info
     
    membrane IEA
    Inferred from Electronic Annotation
    more info
     
    plasma membrane IEA
    Inferred from Electronic Annotation
    more info
     

    General protein information

    Preferred Names
    zona pellucida sperm-binding protein 1
    Names
    truncated zona pellicida glycoprotein 1
    zp-1

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_009580.2NP_033606.2  zona pellucida sperm-binding protein 1 precursor

      See identical proteins and their annotated locations for NP_033606.2

      Status: VALIDATED

      Source sequence(s)
      BC125613
      Consensus CDS
      CCDS37918.1
      UniProtKB/Swiss-Prot
      Q62005
      UniProtKB/TrEMBL
      Q059L1
      Related
      ENSMUSP00000025641.1, OTTMUSP00000052347, ENSMUST00000025641.1, OTTMUST00000094201
      Conserved Domains (3) summary
      smart00018
      Location:226268
      PD; P or trefoil or TFF domain
      smart00241
      Location:271541
      ZP; Zona pellucida (ZP) domain
      pfam00100
      Location:404539
      Zona_pellucida; Zona pellucida-like domain

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm38.p4 C57BL/6J

    Genomic

    1. NC_000085.6 Reference GRCm38.p4 C57BL/6J

      Range
      10914296..10920601 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
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