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    Slc25a25 solute carrier family 25 (mitochondrial carrier, phosphate carrier), member 25 [ Mus musculus (house mouse) ]

    Gene ID: 227731, updated on 23-Jun-2021

    Summary

    Official Symbol
    Slc25a25provided by MGI
    Official Full Name
    solute carrier family 25 (mitochondrial carrier, phosphate carrier), member 25provided by MGI
    Primary source
    MGI:MGI:1915913
    See related
    Ensembl:ENSMUSG00000026819
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    MCSC; mKIAA1896; 1110030N17Rik
    Expression
    Ubiquitous expression in liver adult (RPKM 15.8), cerebellum adult (RPKM 9.7) and 28 other tissues See more
    Orthologs
    NEW
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    Try the new Transcript table

    Genomic context

    See Slc25a25 in Genome Data Viewer
    Location:
    2; 2 B
    Exon count:
    13
    Annotation release Status Assembly Chr Location
    109 current GRCm39 (GCF_000001635.27) 2 NC_000068.8 (32304499..32341482, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 2 NC_000068.7 (32414487..32451470, complement)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 2 NC_000068.6 (32270007..32306990, complement)

    Chromosome 2 - NC_000068.8Genomic Context describing neighboring genes Neighboring gene prostaglandin E synthase 2 Neighboring gene predicted gene 13413 Neighboring gene nuclear apoptosis inducing factor 1 Neighboring gene family with sequence similarity 102, member A Neighboring gene dolichol-phosphate (beta-D) mannosyltransferase 2

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Homology

    Clone Names

    • MGC36388

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables ATP transmembrane transporter activity IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    enables calcium ion binding IEA
    Inferred from Electronic Annotation
    more info
     
    enables metal ion binding IEA
    Inferred from Electronic Annotation
    more info
     
    Component Evidence Code Pubs
    located_in integral component of membrane IEA
    Inferred from Electronic Annotation
    more info
     
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
     
    located_in mitochondrial inner membrane IEA
    Inferred from Electronic Annotation
    more info
     
    located_in mitochondrion HDA PubMed 
    located_in mitochondrion IDA
    Inferred from Direct Assay
    more info
    PubMed 

    General protein information

    Preferred Names
    calcium-binding mitochondrial carrier protein SCaMC-2
    Names
    mitochondrial Ca2+-dependent solute carrier
    small calcium-binding mitochondrial carrier protein 2
    solute carrier family 25 member 25

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001164357.1NP_001157829.1  calcium-binding mitochondrial carrier protein SCaMC-2 isoform 2

      See identical proteins and their annotated locations for NP_001157829.1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (2) lacks an alternate in-frame exon in the central coding region, compared to variant 1, resulting in an isoform (2) that is shorter than isoform 1.
      Source sequence(s)
      AK132204, BB653459, CO043296
      Consensus CDS
      CCDS50568.1
      UniProtKB/Swiss-Prot
      A2ASZ8
      Related
      ENSMUSP00000108936.3, ENSMUST00000113310.9
      Conserved Domains (3) summary
      cd00051
      Location:115174
      EFh; EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to ...
      pfam00153
      Location:309401
      Mito_carr; Mitochondrial carrier protein
      pfam13499
      Location:52109
      EF-hand_7; EF-hand domain pair
    2. NM_001164358.1NP_001157830.1  calcium-binding mitochondrial carrier protein SCaMC-2 isoform 3

      See identical proteins and their annotated locations for NP_001157830.1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (3) contains an alternate 5' terminal exon and it thus differs in the 5' UTR and 5' coding region, compared to variant 1. The encoded isoform (3) has a distinct N-terminus and is shorter than isoform 1.
      Source sequence(s)
      BC066998, CV784232
      Consensus CDS
      CCDS50567.1
      UniProtKB/Swiss-Prot
      A2ASZ8
      Related
      ENSMUSP00000060581.8, ENSMUST00000052119.14
      Conserved Domains (4) summary
      cd00051
      Location:102173
      EFh; EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to ...
      pfam00153
      Location:308400
      Mito_carr; Mitochondrial carrier protein
      pfam13499
      Location:103170
      EF-hand_7; EF-hand domain pair
      cl08302
      Location:6397
      EFh; EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to ...
    3. NM_001290558.1NP_001277487.1  calcium-binding mitochondrial carrier protein SCaMC-2 isoform 4

      See identical proteins and their annotated locations for NP_001277487.1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (4) contains an alternate 5' terminal exon and it thus differs in the 5' UTR and 5' coding region, and it lacks an alternate in-frame exon in the central coding region, compared to variant 1. The encoded isoform (4) has a distinct N-terminus and is shorter than isoform 1.
      Source sequence(s)
      AK049392, BC066998, BY772900
      Consensus CDS
      CCDS71028.1
      UniProtKB/Swiss-Prot
      A2ASZ8
      Related
      ENSMUSP00000108932.3, ENSMUST00000113307.9
      Conserved Domains (4) summary
      cd00051
      Location:82141
      EFh; EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to ...
      pfam00153
      Location:276368
      Mito_carr; Mitochondrial carrier protein
      pfam13499
      Location:83138
      EF-hand_7; EF-hand domain pair
      cl08302
      Location:2977
      EFh; EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to ...
    4. NM_001362905.1NP_001349834.1  calcium-binding mitochondrial carrier protein SCaMC-2 isoform 5

      Status: VALIDATED

      Source sequence(s)
      AL928710
      Consensus CDS
      CCDS89474.1
      Related
      ENSMUSP00000108933.2, ENSMUST00000113308.8
      Conserved Domains (3) summary
      cd15897
      Location:7397
      EFh_PEF; EF-hand motif [structural motif]
      cl25352
      Location:73159
      EFh_PEF; The penta-EF hand (PEF) family
      cl28162
      Location:211465
      Mito_carr; Mitochondrial carrier protein
    5. NM_001362906.1NP_001349835.1  calcium-binding mitochondrial carrier protein SCaMC-2 isoform 6

      Status: VALIDATED

      Source sequence(s)
      AL928710, BM947090
      Conserved Domains (5) summary
      cd15898
      Location:6796
      EFh_PI-PLC; EF-hand motif [structural motif]
      cd15897
      Location:3662
      EFh_PEF; EF-hand motif [structural motif]
      cl25352
      Location:31110
      EFh_PEF; The penta-EF hand (PEF) family
      cl28162
      Location:188442
      Mito_carr; Mitochondrial carrier protein
      cl28895
      Location:67156
      EFh_PI-PLC; EF-hand motif found in eukaryotic phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11) isozymes
    6. NM_001362907.1NP_001349836.1  calcium-binding mitochondrial carrier protein SCaMC-2 isoform 7

      Status: VALIDATED

      Source sequence(s)
      AL928710
      Conserved Domains (3) summary
      cd15897
      Location:3662
      EFh_PEF; EF-hand motif [structural motif]
      cl25352
      Location:31124
      EFh_PEF; The penta-EF hand (PEF) family
      cl28162
      Location:176430
      Mito_carr; Mitochondrial carrier protein
    7. NM_146118.3NP_666230.2  calcium-binding mitochondrial carrier protein SCaMC-2 isoform 1

      See identical proteins and their annotated locations for NP_666230.2

      Status: VALIDATED

      Description
      Transcript Variant: This variant (1) encodes the longest isoform (1).
      Source sequence(s)
      AL928710
      Consensus CDS
      CCDS15915.1
      UniProtKB/Swiss-Prot
      A2ASZ8
      Related
      ENSMUSP00000028160.9, ENSMUST00000028160.15
      Conserved Domains (3) summary
      cd00051
      Location:53110
      EFh; EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to ...
      pfam00153
      Location:321413
      Mito_carr; Mitochondrial carrier protein
      pfam13499
      Location:52109
      EF-hand_7; EF-hand domain pair

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000068.8 Reference GRCm39 C57BL/6J

      Range
      32304499..32341482 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006497955.5XP_006498018.1  calcium-binding mitochondrial carrier protein SCaMC-2 isoform X1

      Conserved Domains (5) summary
      PTZ00169
      Location:203457
      PTZ00169; ADP/ATP transporter on adenylate translocase; Provisional
      cd15898
      Location:82111
      EFh_PI-PLC; EF-hand motif [structural motif]
      cd15897
      Location:5377
      EFh_PEF; EF-hand motif [structural motif]
      cl28895
      Location:82171
      EFh_PI-PLC; EF-hand motif found in eukaryotic phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11) isozymes
      cl25352
      Location:53125
      EFh_PEF; The penta-EF hand (PEF) family
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