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    Nup188 nucleoporin 188 [ Mus musculus (house mouse) ]

    Gene ID: 227699, updated on 12-Aug-2018

    Summary

    Official Symbol
    Nup188provided by MGI
    Official Full Name
    nucleoporin 188provided by MGI
    Primary source
    MGI:MGI:2446190
    See related
    Ensembl:ENSMUSG00000052533 Vega:OTTMUSG00000016767
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    U89435; BC025526
    Expression
    Ubiquitous expression in testis adult (RPKM 50.6), thymus adult (RPKM 23.1) and 27 other tissues See more
    Orthologs

    Genomic context

    See Nup188 in Genome Data Viewer
    Location:
    2; 2 B
    Exon count:
    44
    Annotation release Status Assembly Chr Location
    106 current GRCm38.p4 (GCF_000001635.24) 2 NC_000068.7 (30286422..30344263)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 2 NC_000068.6 (30141953..30199782)

    Chromosome 2 - NC_000068.7Genomic Context describing neighboring genes Neighboring gene phytanoyl-CoA dioxygenase domain containing 1 Neighboring gene dolichol kinase Neighboring gene predicted gene, 39780 Neighboring gene SH3-domain GRB2-like endophilin B2 Neighboring gene mitoguardin 2

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Pathways from BioSystems

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Homology

    Clone Names

    • KIAA0169

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    structural constituent of nuclear pore IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    Process Evidence Code Pubs
    glomerular visceral epithelial cell migration ISO
    Inferred from Sequence Orthology
    more info
     
    mRNA transport IEA
    Inferred from Electronic Annotation
    more info
     
    protein import into nucleus IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    protein transport IEA
    Inferred from Electronic Annotation
    more info
     
    Component Evidence Code Pubs
    nuclear pore IEA
    Inferred from Electronic Annotation
    more info
     
    nuclear pore inner ring IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    nucleus IEA
    Inferred from Electronic Annotation
    more info
     

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_198304.3NP_938046.2  nucleoporin NUP188 homolog

      See identical proteins and their annotated locations for NP_938046.2

      Status: VALIDATED

      Source sequence(s)
      AA002653, AK129073, CJ103580
      Consensus CDS
      CCDS15878.1
      UniProtKB/Swiss-Prot
      Q6ZQH8
      Related
      ENSMUSP00000065836.5, OTTMUSP00000018197, ENSMUST00000064447.11
      Conserved Domains (1) summary
      pfam10487
      Location:31941
      Nup188; Nucleoporin subcomplex protein binding to Pom34

    RNA

    1. NR_156132.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AL954388

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm38.p4 C57BL/6J

    Genomic

    1. NC_000068.7 Reference GRCm38.p4 C57BL/6J

      Range
      30286422..30344263
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006497934.1XP_006497997.1  nucleoporin NUP188 homolog isoform X1

      Conserved Domains (1) summary
      pfam10487
      Location:1747
      Nup188; Nucleoporin subcomplex protein binding to Pom34
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